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scnpilot_expt_750_bf_scaffold_1745

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1745_1
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..478
DNA (477bp) protein (159aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
dihydrodipicolinate reductase-like id=12550776 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
dihydrodipicolinate reductase-like Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_expt_750_bf_scaffold_1745_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1100..1522
DNA (423bp) protein (141aa)
Biopolymer transport protein ExbD/TolR n=2 Tax=Alicycliphilus denitrificans RepID=E8TW47_ALIDB
biopolymer transport protein exbd/tolr
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:GAO25417.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Al
scnpilot_expt_750_bf_scaffold_1745_3
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1589..3211
DNA (1623bp) protein (541aa)
leuS; leucyl-tRNA ligase (EC:6.1.1.4) id=12550773 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
leuS; leucyl-tRNA ligase (EC:6.1.1.4) Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
leucyl-tRNA synthetase (EC:6.1.1.4)
scnpilot_expt_750_bf_scaffold_1745_4
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3211..4185
DNA (975bp) protein (325aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=573060 species="Bacteria; Proteob
leuS; leucyl-tRNA ligase (EC:6.1.1.4)
leucyl-tRNA synthetase n=1 Tax=Acidovorax radicis RepID=UPI000237868F
Suspect SCG annotation. See neighboring gene [scnpilot_expt_750_bf_scaffold_1745_3].
scnpilot_expt_750_bf_scaffold_1745_5
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4190..4687
DNA (498bp) protein (166aa)
membrane protein n=1 Tax=Acidovorax radicis RepID=UPI000237868E
LPS-assembly lipoprotein LptE {ECO:0000256|HAMAP-Rule:MF_01186}; Flags: Precursor;; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" s
rare lipoprotein B
scnpilot_expt_750_bf_scaffold_1745_6
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4701..5036)
DNA (336bp) protein (112aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;"
Arginase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BUY8_9BURK
arginase
scnpilot_expt_750_bf_scaffold_1745_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5703..6758
DNA (1056bp) protein (352aa)
holA; DNA polymerase III subunit delta Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
holA; DNA polymerase III subunit delta id=12550769 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
DNA polymerase III subunit delta
scnpilot_expt_750_bf_scaffold_1745_8
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6760..6966)
DNA (207bp) protein (69aa)
hypothetical protein
hypothetical protein; K09165 hypothetical protein id=12550768 bin=BDI species=unknown genus=Rhodoferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein; K09165 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
scnpilot_expt_750_bf_scaffold_1745_9
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7099..8379
DNA (1281bp) protein (427aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] id=12550766 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:000
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41)
scnpilot_expt_750_bf_scaffold_1745_10
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8396..9838
DNA (1443bp) protein (481aa)
K+ transport system, NAD-binding component n=1 Tax=Acidovorax sp. CF316 RepID=J0KRQ2_9BURK
K+ transport system, NAD-binding component {ECO:0000313|EMBL:EJE53853.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Ac
trkA; potassium transporter peripheral membrane component
scnpilot_expt_750_bf_scaffold_1745_11
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9841..11307
DNA (1467bp) protein (489aa)
Trk system potassium uptake protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8K7_ACIDE
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.
cation transporter
scnpilot_expt_750_bf_scaffold_1745_12
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11357..12649
DNA (1293bp) protein (431aa)
Glutamate/cysteine ligase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8K8_ACIDE
glutamate--cysteine ligase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
glutamate/cysteine ligase
scnpilot_expt_750_bf_scaffold_1745_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12778..13473
DNA (696bp) protein (232aa)
Probable potassium transport system protein kup n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW30_ALIDB
potassium transporter
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;
Displaying 13 items

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