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scnpilot_expt_750_bf_scaffold_1041

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1041_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..477
DNA (477bp) protein (159aa)
cshA; DEAD/DEAH box helicase (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PN36_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39738.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
scnpilot_expt_750_bf_scaffold_1041_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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609..1676
DNA (1068bp) protein (356aa)
diguanylate cyclase n=1 Tax=Afipia birgiae RepID=UPI0002FA7B8B rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS39737.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sour
hypothetical protein
scnpilot_expt_750_bf_scaffold_1041_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1716..2087)
DNA (372bp) protein (124aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V681_9BRAD
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:EFI51828.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afi
FeS assembly protein
scnpilot_expt_750_bf_scaffold_1041_4
unknown

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2329..2859
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037FAB7D
Uncharacterized protein {ECO:0000313|EMBL:CPR16429.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_1041_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2974..3372)
DNA (399bp) protein (133aa)
PaaD-like protein n=2 Tax=Bradyrhizobiaceae RepID=F7QNK5_9BRAD
FeS assembly SUF system protein {ECO:0000313|EMBL:EKS40075.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelanden
FeS assembly SUF system protein
scnpilot_expt_750_bf_scaffold_1041_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3369..4610)
DNA (1242bp) protein (414aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=883078 species="Bacteria; Proteob
Cysteine desulfurase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PN23_9BRAD rbh
sufS; cysteine desulfurase SufS
scnpilot_expt_750_bf_scaffold_1041_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4612..5931)
DNA (1320bp) protein (440aa)
FeS assembly protein SufD n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAW1_9BRAD rbh
FeS assembly protein SufD {ECO:0000313|EMBL:EKS39732.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 497
FeS assembly protein SufD
scnpilot_expt_750_bf_scaffold_1041_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6015..6773)
DNA (759bp) protein (253aa)
FeS assembly ATPase SufC n=1 Tax=Afipia sp. 1NLS2 RepID=D6V677_9BRAD rbh
Putative ATP-dependent transporter SufC {ECO:0000313|EMBL:CEG08172.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis
sufC; FeS assembly ATPase SufC
scnpilot_expt_750_bf_scaffold_1041_9
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6770..8251)
DNA (1482bp) protein (494aa)
Iron-sulfur cluster assembly protein SufB n=2 Tax=Bradyrhizobiaceae RepID=F7QNK9_9BRAD rbh
Iron-sulfur cluster assembly protein SufB {ECO:0000313|EMBL:EGP07424.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiacea
cysteine desulfurase activator complex subunit SufB
scnpilot_expt_750_bf_scaffold_1041_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8340..9500)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PKM6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS40080.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
nifS; cysteine desulfurase
scnpilot_expt_750_bf_scaffold_1041_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9766..10413
DNA (648bp) protein (216aa)
Alpha/beta hydrolase n=2 Tax=Oligotropha carboxidovorans RepID=B6JHE6_OLICO rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI06735.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxido
scnpilot_expt_750_bf_scaffold_1041_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10432..11532)
DNA (1101bp) protein (367aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {
anmK; anhydro-N-acetylmuramic acid kinase AnmK (EC:2.7.1.170)
anhydro-N-acetylmuramic acid kinase n=1 Tax=Afipia birgiae RepID=UPI0002E21BBD
scnpilot_expt_750_bf_scaffold_1041_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11609..12901
DNA (1293bp) protein (431aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:00002
tyrS; tyrosine-tRNA ligase TyrS (EC:6.1.1.1)
Tyrosine--tRNA ligase n=2 Tax=Oligotropha carboxidovorans RepID=B6JHE4_OLICO rbh
scnpilot_expt_750_bf_scaffold_1041_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12941..16474)
DNA (3534bp) protein (1178aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NCW5_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS28447.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
Displaying 14 items

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