ggKbase home page

scnpilot_expt_750_bf_scaffold_1116

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1116_1
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..965
DNA (963bp) protein (321aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YIU5_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH05900.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhiz
hypothetical protein
scnpilot_expt_750_bf_scaffold_1116_2
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(973..1491)
DNA (519bp) protein (173aa)
Putative periplasmic protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SMD2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB75928.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_1116_3
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1516..3495
DNA (1980bp) protein (660aa)
Matrixin n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNG2_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KFG69195.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.
RTX toxins-related Ca2+-binding protein
scnpilot_expt_750_bf_scaffold_1116_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3505..3732
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNG1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25503.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononid
hypothetical protein
scnpilot_expt_750_bf_scaffold_1116_5
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3860..4093
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RES6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL27699.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_1116_6
Mycobacterium kansasii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4096..4452
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=U5WZF1_MYCKA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ53440.1}; TaxID=557599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium kansasii ATCC 12478.;
scnpilot_expt_750_bf_scaffold_1116_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4438..5130)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000361640D
Uncharacterized protein {ECO:0000313|EMBL:KKB09806.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
prp1; serine/threonine protein phosphatase I
scnpilot_expt_750_bf_scaffold_1116_8
Meyerozyma guilliermondii, Meyerozyma, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

5284..6513
DNA (1230bp) protein (410aa)
Putative uncharacterized protein n=1 Tax=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) RepID=A5DD47_PICGU
Putative uncharacterized protein {ECO:0000313|EMBL:EDK37104.2}; TaxID=294746 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Me
colicin uptake-like protein
scnpilot_expt_750_bf_scaffold_1116_9
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6559..7314)
DNA (756bp) protein (252aa)
rRNA methylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCU8_PELHB
RNA methyltransferase {ECO:0000313|EMBL:KFL31398.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rRNA methylase
scnpilot_expt_750_bf_scaffold_1116_trna_1
unknown

Not on your lists

7492..7578
DNA (87bp)
transferRNA
scnpilot_expt_750_bf_scaffold_1116_trna_2
unknown

Not on your lists

7590..7660
DNA (71bp)
transferRNA
scnpilot_expt_750_bf_scaffold_1116_10
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7696..8373
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Chlorobium limicola (strain DSM 245 / NBRC 103803) RepID=B3EFM9_CHLL2
Uncharacterized protein {ECO:0000313|EMBL:KEO90886.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter l
hypothetical protein
scnpilot_expt_750_bf_scaffold_1116_11
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8370..9260)
DNA (891bp) protein (297aa)
UPI0003CDFD55 related cluster n=1 Tax=unknown RepID=UPI0003CDFD55 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:ESW85420.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mes
LysR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_1116_12
unknown

Not on your lists

9363..9539
DNA (177bp) protein (59aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1116_13
unknown

Not on your lists

comp(9576..9833)
DNA (258bp) protein (86aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1116_trna_3
unknown

Not on your lists

9994..10066
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_1116_14
Sulfitobacter donghicola, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10138..11277)
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003752A29
Patatin {ECO:0000313|EMBL:KEJ89547.1}; TaxID=1300350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter donghicola DSW-25
patatin
scnpilot_expt_750_bf_scaffold_1116_15
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11396..12328
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Vibrio splendidus ATCC 33789 RepID=F9SKL6_VIBSP
Uncharacterized protein {ECO:0000313|EMBL:KKC32902.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_1116_16
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12537..12728
DNA (192bp) protein (64aa)
Protein translocase subunit SecE n=1 Tax=Rhizobium sp. RepID=L0NEH3_RHISP
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geoj
preprotein translocase subunit SecE
scnpilot_expt_750_bf_scaffold_1116_17
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12765..13295
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP7_PELHB
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobial
transcription antitermination protein NusG
scnpilot_expt_750_bf_scaffold_1116_18
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13512..13958
DNA (447bp) protein (149aa)
50S ribosomal protein L11 n=1 Tax=Ahrensia sp. R2A130 RepID=E0MJD4_9RHOB
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001
rplK; 50S ribosomal protein L11
scnpilot_expt_750_bf_scaffold_1116_19
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13962..14657
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP5_PELHB rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.
50S ribosomal protein L1p (L10Ae)
scnpilot_expt_750_bf_scaffold_1116_20
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14930..15463
DNA (534bp) protein (178aa)
50S ribosomal protein L10 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP4_PELHB
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia
50S ribosomal protein L10
scnpilot_expt_750_bf_scaffold_1116_21
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15533..15913
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP3_PELHB
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavi
50S ribosomal protein L7/L12
scnpilot_expt_750_bf_scaffold_1116_22
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16157..17365
DNA (1209bp) protein (403aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC44_PELHB
DNA-directed RNA polymerase subunit beta
Displaying 25 items

View Taxonomy