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scnpilot_expt_750_bf_scaffold_1567

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1567_1
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..97)
DNA (96bp) protein (32aa)
LexA repressor (EC:3.4.21.88)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=666684 species="Bacteria; Proteob
LexA repressor n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=LEXA_NITHX
scnpilot_expt_750_bf_scaffold_1567_2
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(328..1560)
DNA (1233bp) protein (411aa)
Molybdenum cofactor synthesis domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9L6_9BRAD rbh
Molybdenum cofactor synthesis domain protein {ECO:0000313|EMBL:EFI50160.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipi
molybdopterin biosynthesis protein
scnpilot_expt_750_bf_scaffold_1567_3
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1568..2053)
DNA (486bp) protein (162aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9L5_9BRAD
moaC; GTP cyclohydrolase subunit MoaC
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=288000 species="Bact
scnpilot_expt_750_bf_scaffold_1567_4
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2064..2891)
DNA (828bp) protein (276aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:
Indole-3-glycerol phosphate synthase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D969_BRAJP
Indole-3-glycerol phosphate synthase
scnpilot_expt_750_bf_scaffold_1567_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2906..3919)
DNA (1014bp) protein (338aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00211}; EC=2.4.2.18 {ECO:0000255|HAMAP-Rule:MF_00211};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobial
Anthranilate phosphoribosyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=TRPD_RHOP5
scnpilot_expt_750_bf_scaffold_1567_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3924..5831)
DNA (1908bp) protein (636aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiace
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 PF06_9BRAD">RepID=K8PF06_9BRAD
putative peptidyl-prolyl cis-trans isomerase
scnpilot_expt_750_bf_scaffold_1567_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6034..6801
DNA (768bp) protein (256aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleB
Triosephosphate isomerase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PFK7_9BRAD rbh
tpiA; triosephosphate isomerase
scnpilot_expt_750_bf_scaffold_1567_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7053..7430
DNA (378bp) protein (126aa)
Preprotein translocase subunit SecG n=2 Tax=Bradyrhizobiaceae RepID=F7QMJ3_9BRAD
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:EKS40322.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevel
secG; preprotein translocase subunit SecG
scnpilot_expt_750_bf_scaffold_1567_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7595..9130
DNA (1536bp) protein (512aa)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase {ECO:0000255|HAMAP-Rule:MF_01227}; EC=6.3.4.2 {ECO:0000255|HAMAP-Rule:MF_01227};; CTP synthetase {ECO:0000255|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000255|HAMAP-Rule:MF_01227};
CTP synthase n=2 Tax=Nitrobacter hamburgensis RepID=PYRG_NITHX
scnpilot_expt_750_bf_scaffold_1567_10
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9213..10028
DNA (816bp) protein (272aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JFY9_OLICO rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI06449.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxido
scnpilot_expt_750_bf_scaffold_1567_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10190..10522
DNA (333bp) protein (111aa)
NIPSNAP family containing protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9K7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07917.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
nipsnap family containing protein
scnpilot_expt_750_bf_scaffold_1567_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10587..11447
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002EA2C18
Uncharacterized protein {ECO:0000313|EMBL:EKS38149.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_1567_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11619..12485
DNA (867bp) protein (289aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-man
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NI04_AFIFE rbh
scnpilot_expt_750_bf_scaffold_1567_14
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12531..13694
DNA (1164bp) protein (388aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMK0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP07565.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.
putative Permease of the major facilitator superfamily
scnpilot_expt_750_bf_scaffold_1567_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13713..14192)
DNA (480bp) protein (160aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyan
queF; 7-cyano-7-deazaguanine reductase (EC:1.7.1.-)
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKK1_AFIFE
scnpilot_expt_750_bf_scaffold_1567_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14330..15100
DNA (771bp) protein (257aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGG4_AFIFE
scnpilot_expt_750_bf_scaffold_1567_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15121..15486
DNA (366bp) protein (122aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000
eno; enolase (EC:4.2.1.11)
Enolase n=2 Tax=Bradyrhizobiaceae RepID=F7QMK2_9BRAD
scnpilot_expt_750_bf_scaffold_1567_18
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15734..16285
DNA (552bp) protein (184aa)
ACP phosphodiesterase n=1 Tax=Afipia birgiae RepID=UPI0002DAE80C
NADPH-dependent fmn reductase
Putative flavoprotein {ECO:0000313|EMBL:AEI06457.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovo
scnpilot_expt_750_bf_scaffold_1567_19
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16419..16736
DNA (318bp) protein (106aa)
septum formation initiator n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003661007
Septum formation initiator {ECO:0000313|EMBL:EJN09201.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" sou
hypothetical protein
scnpilot_expt_750_bf_scaffold_1567_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16891..17931
DNA (1041bp) protein (347aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhi
pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PLG0_9BRAD
scnpilot_expt_750_bf_scaffold_1567_21
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17993..19393
DNA (1401bp) protein (467aa)
pyruvate dehydrogenase subunit beta (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component subunit beta {ECO:0000313|EMBL:AEI06462.1}; EC=1.2.4.1 {ECO:0000313|EMBL:AEI06462.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobia
Pyruvate dehydrogenase E1 component subunit beta n=2 Tax=Oligotropha carboxidovorans RepID=B6JFX5_OLICO rbh
scnpilot_expt_750_bf_scaffold_1567_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19409..19555
DNA (147bp) protein (49aa)
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (EC:2.3.1.12)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteo
Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VHN1_RHOPX
Displaying 22 items

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