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scnpilot_expt_750_bf_scaffold_2061

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2061_1
unknown

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comp(1..960)
DNA (960bp) protein (320aa)
Beta-lactamase domain-containing protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A599_STAND rbh
Beta-lactamase domain protein {ECO:0000313|EMBL:CPR18091.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobiu
beta-lactamase domain-containing protein
scnpilot_expt_750_bf_scaffold_2061_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1543..2031
DNA (489bp) protein (163aa)
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU62_9RHIZ
Carbon-monoxide dehydrogenase small subunit {ECO:0000313|EMBL:KFC67626.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea
(2Fe-2S)-binding domain-containing protein
scnpilot_expt_750_bf_scaffold_2061_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2059..4425
DNA (2367bp) protein (789aa)
carbon-monoxide dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EEECE0
Carbon-monoxide dehydrogenase, large subunit {ECO:0000313|EMBL:KFC67625.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea
aldehyde oxidase/xanthine dehydrogenase
scnpilot_expt_750_bf_scaffold_2061_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4437..5228
DNA (792bp) protein (264aa)
Molybdopterin dehydrogenase FAD-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2KJY7_9PROT
Carbon monoxide dehydrogenase {ECO:0000313|EMBL:KGM34026.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus
carbon monoxide dehydrogenase medium subunit
scnpilot_expt_750_bf_scaffold_2061_5
unknown

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comp(5388..5834)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003651053
scnpilot_expt_750_bf_scaffold_2061_6
bacterium YEK0313, Bacteria

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comp(6004..6804)
DNA (801bp) protein (267aa)
Branched-chain amino acid aminotransferase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QRY6_METTR
Branched-chain-amino-acid aminotransferase {ECO:0000313|EMBL:CEJ14437.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
branched-chain amino acid transferase
scnpilot_expt_750_bf_scaffold_2061_7
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7272..7814
DNA (543bp) protein (181aa)
HTH-type transcriptional regulator PetP n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RAJ9_9RHIZ
HTH-type transcriptional regulator PetP {ECO:0000313|EMBL:ESR23206.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculu
MarR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_2061_8
unknown

Not on your lists

7811..8527
DNA (717bp) protein (239aa)
Winged helix family two component transcriptional regulator n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BEF2_9RHIZ rbh
DNA-binding response regulator in two-component regulatory system with EnvZ {ECO:0000313|EMBL:CPR20083.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicro
winged helix family two component transcriptional regulator
scnpilot_expt_750_bf_scaffold_2061_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8581..10014
DNA (1434bp) protein (478aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyp
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037B957E rbh
integral membrane sensor signal transduction histidine kinase
scnpilot_expt_750_bf_scaffold_2061_10
unknown

Not on your lists

10164..10415
DNA (252bp) protein (84aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_2061_11
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10469..10831)
DNA (363bp) protein (121aa)
tRNA-binding protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037ED299
tRNA-binding protein {ECO:0000313|EMBL:ESX62939.1}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LS
tRNA-binding protein
scnpilot_expt_750_bf_scaffold_2061_12
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10857..11684)
DNA (828bp) protein (276aa)
Ribonuclease BN n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGW1_9RHIZ
ribonuclease BN
Ribonuclease BN {ECO:0000313|EMBL:AHB49768.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativor
scnpilot_expt_750_bf_scaffold_2061_13
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11768..12352)
DNA (585bp) protein (195aa)
Hexapeptide repeat-containing transferase n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SHY9_9BURK
Hexapeptide repeat-containing transferase {ECO:0000313|EMBL:EHP37914.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="
Bacterial transferase family protein
scnpilot_expt_750_bf_scaffold_2061_14
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12385..13092)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JBC0_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB63806.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp.
scnpilot_expt_750_bf_scaffold_2061_15
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13223..13786
DNA (564bp) protein (188aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=
Orotate phosphoribosyltransferase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JBB8_HYPSM
scnpilot_expt_750_bf_scaffold_2061_16
unknown

Not on your lists

comp(14011..15003)
DNA (993bp) protein (331aa)
Secretion protein HlyD n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SAC7_9RHIZ
Secretion protein HlyD {ECO:0000313|EMBL:CPR22397.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y
secretion protein HlyD
scnpilot_expt_750_bf_scaffold_2061_17
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14996..15553)
DNA (558bp) protein (186aa)
ABC transporter related protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JUT4_HYPDA
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADJ24714.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicro
Displaying 17 items

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