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scnpilot_expt_750_bf_scaffold_2088

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2088_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(467..676)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P5I7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35999.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
hypothetical protein
scnpilot_expt_750_bf_scaffold_2088_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(986..2995)
DNA (2010bp) protein (670aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCB9_9BRAD
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:EKS35998.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevela
flhA; flagellar biosynthesis protein FlhA
scnpilot_expt_750_bf_scaffold_2088_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3427..4620
DNA (1194bp) protein (398aa)
Putative oxalate/formate antiporter n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QRM3_9BRAD rbh
Putative oxalate/formate antiporter {ECO:0000313|EMBL:EGP06234.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bact
major facilitator superfamily protein
scnpilot_expt_750_bf_scaffold_2088_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4683..5069
DNA (387bp) protein (129aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase
Aspartate 1-decarboxylase n=2 Tax=Bradyrhizobiaceae RepID=F7QRM2_9BRAD
aspartate decarboxylase
scnpilot_expt_750_bf_scaffold_2088_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5107..6237
DNA (1131bp) protein (377aa)
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
8-amino-7-oxononanoate synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAZ4_9BRAD rbh
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:EKS36750.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae AT
scnpilot_expt_750_bf_scaffold_2088_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6234..6875
DNA (642bp) protein (214aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {EC
bioD; dithiobiotin synthetase (EC:6.3.3.3)
dithiobiotin synthetase n=1 Tax=Afipia birgiae RepID=UPI0002FD5C03 rbh
scnpilot_expt_750_bf_scaffold_2088_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6872..8131
DNA (1260bp) protein (420aa)
adenosylmethionine--8-amino-7-oxononanoate transaminase (EC:2.6.1.62)
adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Afipia birgiae RepID=UPI0002F85982 rbh
Adenosylmethionine-8-amino-7-oxononanoate transaminase {ECO:0000313|EMBL:EKS35993.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sou
scnpilot_expt_750_bf_scaffold_2088_trna_1
unknown

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8297..8369
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_2088_8
unknown

Not on your lists

8498..8971
DNA (474bp) protein (158aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_2088_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9582..10193
DNA (612bp) protein (204aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q138J1_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE39498.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
scnpilot_expt_750_bf_scaffold_2088_10
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11211..11597
DNA (387bp) protein (129aa)
Transposase IS3/IS911 family protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RVK8_9SPHN
transposase
Transposase {ECO:0000313|EMBL:KKC26214.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
scnpilot_expt_750_bf_scaffold_2088_11
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11775..12575
DNA (801bp) protein (267aa)
Integrase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HXP4_9SPHN
Integrase {ECO:0000313|EMBL:KEO86841.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
transposase
scnpilot_expt_750_bf_scaffold_2088_12
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12825..13361
DNA (537bp) protein (179aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26)
O-succinylbenzoate--CoA ligase {ECO:0000313|EMBL:ADX43995.1}; EC=6.2.1.26 {ECO:0000313|EMBL:ADX43995.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
PREDICTED: probable 4-coumarate--CoA ligase 1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C17493
scnpilot_expt_750_bf_scaffold_2088_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13307..14005)
DNA (699bp) protein (233aa)
transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI0003766706 rbh
Transcriptional activator FtrB {ECO:0000313|EMBL:CEG07058.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scr
Crp family transcriptional regulator
scnpilot_expt_750_bf_scaffold_2088_14
unknown

Not on your lists

14127..14813
DNA (687bp) protein (229aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_2088_15
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14810..16768
DNA (1959bp) protein (653aa)
MFS transporter n=1 Tax=Afipia birgiae RepID=UPI0002E5AD1E
Nitrite extrusion protein NarK {ECO:0000313|EMBL:AEI07608.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha ca
narK; nitrite extrusion protein NarK
scnpilot_expt_750_bf_scaffold_2088_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16828..20571
DNA (3744bp) protein (1248aa)
narG; respiratory nitrate reductase alpha chain NarG (EC:1.7.99.4)
nitrate reductase A subunit alpha n=1 Tax=Afipia birgiae RepID=UPI0002E72A81 rbh
Respiratory nitrate reductase 1 alpha chain {ECO:0000313|EMBL:CEG07063.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia f
scnpilot_expt_750_bf_scaffold_2088_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20568..22088
DNA (1521bp) protein (507aa)
narH; respiratory nitrate reductase beta chain NarH (EC:1.7.99.4)
nitrate reductase A subunit beta n=1 Tax=Afipia birgiae RepID=UPI0003676A55 rbh
Respiratory nitrate reductase 2 beta chain {ECO:0000313|EMBL:EKS30992.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia
scnpilot_expt_750_bf_scaffold_2088_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22088..22792
DNA (705bp) protein (235aa)
nitrate reductase n=1 Tax=Afipia birgiae RepID=UPI0002E2080C rbh
Nitrate reductase molybdenum cofactor assembly chaperone {ECO:0000313|EMBL:EKS30993.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" s
narJ; nitrate reductase molybdenum cofactor assembly chaperone
scnpilot_expt_750_bf_scaffold_2088_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22804..23529
DNA (726bp) protein (242aa)
narI; respiratory nitrate reductase gamma chain NarI (EC:1.7.99.4)
nitrate reductase n=1 Tax=Afipia birgiae RepID=UPI0002FF1587
Respiratory nitrate reductase, gamma subunit {ECO:0000313|EMBL:EKS30994.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipi
scnpilot_expt_750_bf_scaffold_2088_20
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23533..23934
DNA (402bp) protein (134aa)
peptidyl-prolyl cis-trans isomerase n=1 Tax=Afipia birgiae RepID=UPI0002E5E336
peptidyl-prolyl cis-trans isomerase domain protein
Peptidyl-prolyl cis-trans isomerase domain protein {ECO:0000313|EMBL:AEI07603.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" so
scnpilot_expt_750_bf_scaffold_2088_21
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24039..24305
DNA (267bp) protein (89aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae
peptidyl-prolyl cis-trans isomerase n=1 Tax=Afipia birgiae RepID=UPI0002E5E336
PpiC-type peptidyl-prolyl cis-trans isomerase
scnpilot_expt_750_bf_scaffold_2088_22
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24321..24677
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003129379
Uncharacterized protein {ECO:0000313|EMBL:CEG07069.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein
scnpilot_expt_750_bf_scaffold_2088_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24674..25030
DNA (357bp) protein (119aa)
molybdenum cofactor biosynthesis protein MogA n=1 Tax=Afipia birgiae RepID=UPI000303AFB9
Molybdenum cofactor synthesis domain-containing protein {ECO:0000313|EMBL:EKS30997.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" so
mog; molybdopterin adenylyltransferase Mog
Displaying 24 items

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