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scnpilot_expt_750_bf_scaffold_2478

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2478_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..392
DNA (390bp) protein (130aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000313|EMBL:EGP06855.1}; EC=1.1.1.205 {ECO:0000313|EMBL:EGP06855.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bra
Inosine-5'-monophosphate dehydrogenase n=2 Tax=Bradyrhizobiaceae RepID=F7QP84_9BRAD
signal-transduction protein
scnpilot_expt_750_bf_scaffold_2478_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(567..1601)
DNA (1035bp) protein (345aa)
phospholipase n=1 Tax=Afipia birgiae RepID=UPI0002DE0169 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS37557.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
patatin
scnpilot_expt_750_bf_scaffold_2478_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1828..2925
DNA (1098bp) protein (366aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QP82_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP06853.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.
hypothetical protein
scnpilot_expt_750_bf_scaffold_2478_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3069..4127
DNA (1059bp) protein (353aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0I3_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS36117.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sour
diguanylate cyclase/phosphodiesterase
scnpilot_expt_750_bf_scaffold_2478_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4144..4653
DNA (510bp) protein (170aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0I3_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS36117.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sour
GGDEF domain-containing protein
scnpilot_expt_750_bf_scaffold_2478_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4628..5485
DNA (858bp) protein (286aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0I3_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS36117.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sour
hypothetical protein
scnpilot_expt_750_bf_scaffold_2478_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5630..6193)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3Q7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36116.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
NAD(P)H nitroreductase
scnpilot_expt_750_bf_scaffold_2478_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6287..8323)
DNA (2037bp) protein (679aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=2 Tax=Bradyrhizobiaceae RepID=F7QQ74_9BRAD rbh
scnpilot_expt_750_bf_scaffold_2478_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8528..9652
DNA (1125bp) protein (375aa)
MFS transporter n=1 Tax=Afipia birgiae RepID=UPI0002ED18F9 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS37553.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
major facilitator transporter
scnpilot_expt_750_bf_scaffold_2478_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9641..9982)
DNA (342bp) protein (114aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P4R1_9BRAD
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales
hypothetical protein
scnpilot_expt_750_bf_scaffold_2478_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10212..11114
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0H9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36112.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_2478_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11120..11575)
DNA (456bp) protein (152aa)
nitrogen-fixing protein NifU n=1 Tax=Afipia birgiae RepID=UPI00030EBCB3
Uncharacterized protein {ECO:0000313|EMBL:EKS36111.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
nitrogen-fixing NifU-like protein
scnpilot_expt_750_bf_scaffold_2478_13
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11819..12445
DNA (627bp) protein (209aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 n=2 Tax=Bradyrhizobiaceae RepID=F7QQ68_9BRAD rbh
scnpilot_expt_750_bf_scaffold_2478_14
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12520..13029
DNA (510bp) protein (170aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0
phosphoribosyl-AMP cyclohydrolase (PRA-CH) (EC:3.5.4.19)
phosphoribosyl-AMP cyclohydrolase n=1 Tax=Afipia birgiae RepID=UPI0003078A71
scnpilot_expt_750_bf_scaffold_2478_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13221..14210
DNA (990bp) protein (330aa)
transglycosylase n=1 Tax=Afipia birgiae RepID=UPI0002E00897 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36108.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_2478_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14303..15028
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0H5_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36107.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_2478_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15249..16535
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5T9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36104.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_2478_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16703..17281)
DNA (579bp) protein (193aa)
histidine kinase n=1 Tax=Afipia birgiae RepID=UPI0002D58E5A rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36103.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
histidine kinase
scnpilot_expt_750_bf_scaffold_2478_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17290..17835)
DNA (546bp) protein (182aa)
chemotaxis protein CheY n=1 Tax=Afipia birgiae RepID=UPI0002F2A0D3 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36102.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
response regulator receiver domain-containing protein
scnpilot_expt_750_bf_scaffold_2478_20
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17936..18487)
DNA (552bp) protein (184aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-
ppnK; inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=2 Tax=Bradyrhizobiaceae RepID=F7QQ58_9BRAD
scnpilot_expt_750_bf_scaffold_2478_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19010..19237
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PE43_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39019.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
scnpilot_expt_750_bf_scaffold_2478_22
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19314..21566)
DNA (2253bp) protein (751aa)
TonB-dependent receptor n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QQ54_9BRAD rbh
TonB-dependent receptor {ECO:0000313|EMBL:EGP06831.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.
TonB-dependent receptor
scnpilot_expt_750_bf_scaffold_2478_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22002..22481
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000364B20C
Uncharacterized protein {ECO:0000313|EMBL:EKS36097.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
conserved exported hypothetical protein
scnpilot_expt_750_bf_scaffold_2478_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22504..22974
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3N6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36096.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
tryptophan-rich sensory protein
scnpilot_expt_750_bf_scaffold_2478_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22982..24208)
DNA (1227bp) protein (409aa)
beta-lactamase 6-aminohexanoate-dimer hydrolase (EC:3.5.1.46)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P8Y8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36095.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
scnpilot_expt_750_bf_scaffold_2478_26
unknown

Not on your lists

24267..24497
DNA (231bp) protein (77aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_2478_27
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24620..25171)
DNA (552bp) protein (184aa)
photosystem reaction center subunit H n=1 Tax=Afipia birgiae RepID=UPI0002F1F3AF
Uncharacterized protein {ECO:0000313|EMBL:EKS36094.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_2478_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25257..25466)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000311C07C
Uncharacterized protein {ECO:0000313|EMBL:EKS36093.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_2478_trna_1
unknown

Not on your lists

comp(25625..25696)
DNA (72bp)
transferRNA
scnpilot_expt_750_bf_scaffold_2478_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25921..26394
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5S1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36089.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
Displaying items 1-30 of 31 in total

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