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scnpilot_expt_750_bf_scaffold_2592

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2592_1
unknown

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comp(3..404)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037AE691
Uncharacterized protein {ECO:0000313|EMBL:CPR16372.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp.
ErfK/YbiS/YcfS/YnhG family protein
scnpilot_expt_750_bf_scaffold_2592_2

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comp(663..1412)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AZY8_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:KKN83635.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
conserved membrane protein of unknown function
scnpilot_expt_750_bf_scaffold_2592_3
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1506..2300)
DNA (795bp) protein (265aa)
HpcH/HpaI aldolase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TK79_9PROT rbh
HpcH/HpaI aldolase {ECO:0000313|EMBL:EDP67005.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hpcH/HpaI aldolase/citrate lyase family protein
scnpilot_expt_750_bf_scaffold_2592_4
unknown

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comp(2605..3165)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035E91AE rbh
HNH endonuclease {ECO:0000313|EMBL:CPR16567.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_2592_5
unknown

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3389..3928
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000379D8B4
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" sourc
molybdenum cofactor biosynthesis protein B
scnpilot_expt_750_bf_scaffold_2592_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3894..4646)
DNA (753bp) protein (251aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SA
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000375835D rbh
ribonuclease HII
scnpilot_expt_750_bf_scaffold_2592_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4659..5546)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Puniceispirillum marinum (strain IMCC1322) RepID=D5BTW7_PUNMI
hypothetical protein; K02051 NitT/TauT family transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_2592_8
unknown

Not on your lists

5707..6903
DNA (1197bp) protein (399aa)
1-aminocyclopropane-1-carboxylate deaminase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBQ5_9RHIZ rbh
1-aminocyclopropane-1-carboxylate deaminase {ECO:0000313|EMBL:CPR14664.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source
1-aminocyclopropane-1-carboxylate deaminase
scnpilot_expt_750_bf_scaffold_2592_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7103..7417
DNA (315bp) protein (105aa)
Molecular chaperone GroES n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SH77_9RHIZ
molecular chaperone GroES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1029756 spec
scnpilot_expt_750_bf_scaffold_2592_10
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7508..8491
DNA (984bp) protein (328aa)
molecular chaperone GroEL n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003654FCA
groEL; molecular chaperone GroEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1029756 spec
scnpilot_expt_750_bf_scaffold_2592_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8574..9065
DNA (492bp) protein (164aa)
molecular chaperone GroEL n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003654FCA
chaperonin GroEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=670307 speci
scnpilot_expt_750_bf_scaffold_2592_12
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9355..9939
DNA (585bp) protein (195aa)
30S ribosomal protein S6 n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYS1_HYPDA
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobiu
30S ribosomal protein S6
scnpilot_expt_750_bf_scaffold_2592_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9943..10200
DNA (258bp) protein (86aa)
30S ribosomal protein S18 n=2 Tax=Hyphomicrobium denitrificans RepID=D8JYS2_HYPDA
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobi
scnpilot_expt_750_bf_scaffold_2592_14
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10337..11341
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000366B7DA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB48863.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium ni
scnpilot_expt_750_bf_scaffold_2592_15
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11403..11981
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036184BB
50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobi
scnpilot_expt_750_bf_scaffold_2592_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12246..13508
DNA (1263bp) protein (421aa)
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N599_RHOPA
cfa2; cyclopropane-fatty-acyl-phospholipid synthase
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:CAE28523.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" so
scnpilot_expt_750_bf_scaffold_2592_17

Not on your lists

comp(13525..14037)
DNA (513bp) protein (171aa)
pck; phosphoenolpyruvate carboxykinase (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PJK2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKN80923.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
scnpilot_expt_750_bf_scaffold_2592_18
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

14082..14798
DNA (717bp) protein (239aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY11863.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
Displaying 18 items

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