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scnpilot_expt_750_bf_scaffold_1370

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1370_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1642
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NI17_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30007.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_1370_2
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1751..2089
DNA (339bp) protein (113aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:EGO94077.1}; EC=4.2.1.9 {ECO:0000313|EMBL:EGO94077.1};; Flags: Fragment;; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospiril
Dihydroxy-acid dehydratase (Fragment) n=1 Tax=Acidiphilium sp. PM RepID=F7S9U8_9PROT
scnpilot_expt_750_bf_scaffold_1370_3
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2089..3450
DNA (1362bp) protein (454aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:EGO94077.1}; EC=4.2.1.9 {ECO:0000313|EMBL:EGO94077.1};; Flags: Fragment;; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospiril
Dihydroxyacid dehydratase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G0M6_ACICJ
scnpilot_expt_750_bf_scaffold_1370_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3483..4772)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PSF6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42470.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A rbh
scnpilot_expt_750_bf_scaffold_1370_5
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4823..5365)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E8924D rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP08302.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.
hypothetical protein
scnpilot_expt_750_bf_scaffold_1370_6
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5438..6136)
DNA (699bp) protein (233aa)
ABC transporter ATP-binding protein n=1 Tax=Afipia birgiae RepID=UPI0002D869B4 rbh
High-affinity branched-chain amino acid transport ATP-binding protein BivF {ECO:0000313|EMBL:GAJ37923.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizob
ABC transporter-like protein
scnpilot_expt_750_bf_scaffold_1370_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6133..6879)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PIJ1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42467.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
ABC transporter
scnpilot_expt_750_bf_scaffold_1370_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6876..7802)
DNA (927bp) protein (309aa)
ABC transporter permease protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKD0_9BRAD rbh
ABC transporter permease protein {ECO:0000313|EMBL:EGP08299.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacteri
inner-membrane translocator
scnpilot_expt_750_bf_scaffold_1370_9
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7799..8695)
DNA (897bp) protein (299aa)
High-affinity branched-chain amino acid transport system permease protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKC9_9BRAD rbh
High-affinity branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:EGP08298.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobia
inner-membrane translocator
scnpilot_expt_750_bf_scaffold_1370_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8761..10056)
DNA (1296bp) protein (432aa)
ABC-type transport system periplasmic substrate-binding protein n=2 Tax=Bradyrhizobiaceae RepID=F7QKC8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42464.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
extracellular ligand-binding receptor
scnpilot_expt_750_bf_scaffold_1370_11
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10138..10431)
DNA (294bp) protein (98aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PVR5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP08296.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.
hypothetical protein
scnpilot_expt_750_bf_scaffold_1370_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10644..11162)
DNA (519bp) protein (173aa)
oxygenase n=1 Tax=Afipia birgiae RepID=UPI00030E0293 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42461.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
FMN-binding flavin reductase
scnpilot_expt_750_bf_scaffold_1370_13
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11364..12833)
DNA (1470bp) protein (490aa)
2-hydroxymuconic semialdehyde dehydrogenase n=1 Tax=Methyloversatilis universalis RepID=UPI00037682F6
Aldehyde dehydrogenase {ECO:0000313|EMBL:EDM83237.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED1
2-hydroxymuconic semialdehyde dehydrogenase
scnpilot_expt_750_bf_scaffold_1370_14
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13163..13741)
DNA (579bp) protein (193aa)
MarR family transcriptional regulator n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B2AE8
marR; regulatory protein
Regulatory protein {ECO:0000313|EMBL:BAF90189.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans
scnpilot_expt_750_bf_scaffold_1370_15
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13890..15479)
DNA (1590bp) protein (530aa)
Thiamine pyrophosphate protein n=4 Tax=Pseudomonas aeruginosa RepID=U8R0J7_PSEAI
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI74824.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source=
thiamine pyrophosphate enzyme, central domain protein
scnpilot_expt_750_bf_scaffold_1370_16
Ralstonia sp. M1, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15525..16928)
DNA (1404bp) protein (468aa)
Hypothetical transmembrane protein n=1 Tax=Ralstonia sp. M1 RepID=Q67DX3_9RALS
Hypothetical transmembrane protein {ECO:0000313|EMBL:AAR13271.1}; TaxID=246405 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia
hypothetical protein
scnpilot_expt_750_bf_scaffold_1370_17
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16925..17374)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11D56_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG64669.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp.
scnpilot_expt_750_bf_scaffold_1370_18
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17450..18418)
DNA (969bp) protein (323aa)
Uncharacterized protein UPF0065 n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VKK8_POLNA
hypothetical protein
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:ABM36186.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" so
scnpilot_expt_750_bf_scaffold_1370_19
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18472..19896)
DNA (1425bp) protein (475aa)
3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D4Z9_PELTS
UbiD family decarboxylase Tax=RBG_16_Betaproteobacteria_64_18_curated
UbiD; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
scnpilot_expt_750_bf_scaffold_1370_20
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20005..20535)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGP1_9RHOB
TIGR02444 family protein
TIGR02444 family protein {ECO:0000313|EMBL:CDN56892.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" sour
scnpilot_expt_750_bf_scaffold_1370_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20574..21137)
DNA (564bp) protein (188aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiac
ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC:4.1.1.-)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6INR8_RHOCS
scnpilot_expt_750_bf_scaffold_1370_22
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21542..23038)
DNA (1497bp) protein (499aa)
4-hydroxyphenylacetate 3-hydroxylase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HSJ4_AZOC5 rbh
4-hydroxyphenylacetate 3-hydroxylase
4-hydroxyphenylacetate 3-hydroxylase {ECO:0000313|EMBL:BAF90187.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhiz
scnpilot_expt_750_bf_scaffold_1370_23
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23526..25322
DNA (1797bp) protein (599aa)
allophanate hydrolase (EC:3.5.1.4)
Putative glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) {ECO:0000313|EMBL:CAL80409.1}; EC=6.3.5.- {ECO:0000313|EMBL:CAL80409.1};; TaxID=114615 species="Bacteria; Proteobacteria; Alp
Allophanate hydrolase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z0S4_9BRAD rbh
scnpilot_expt_750_bf_scaffold_1370_24
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25424..26377
DNA (954bp) protein (318aa)
NMT1/THI5 like domain protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJB5_METS4 rbh
NMT1/THI5-like domain-containing protein
NMT1/THI5 like domain protein {ECO:0000313|EMBL:ACA14965.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.
scnpilot_expt_750_bf_scaffold_1370_25
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26374..26736
DNA (363bp) protein (121aa)
ABC transporter permease n=1 Tax=Methylobacterium sp. 77 RepID=UPI00037DF12A
binding-protein-dependent transporters inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACK82147.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriacea
scnpilot_expt_750_bf_scaffold_1370_26
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26733..27158
DNA (426bp) protein (142aa)
ABC transporter permease n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00036C3D8A
Binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AIQ88208.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriacea
scnpilot_expt_750_bf_scaffold_1370_27
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27151..27690
DNA (540bp) protein (180aa)
sulfonate ABC transporter ATP-binding protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003633EBC
ABC transporter-like protein {ECO:0000313|EMBL:EMS43866.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methyloba
ABC transporter-like protein
scnpilot_expt_750_bf_scaffold_1370_28
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27687..27881
DNA (195bp) protein (65aa)
sulfonate ABC transporter ATP-binding protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000374CA63
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACA14967.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacteri
scnpilot_expt_750_bf_scaffold_1370_29
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27953..28900)
DNA (948bp) protein (316aa)
LysR family transcriptional regulator n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S5L9_9BURK rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EHP42101.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupr
transcriptional regulator, MerR family
scnpilot_expt_750_bf_scaffold_1370_30
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29008..29445
DNA (438bp) protein (146aa)
mmsA; methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27)
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Burkholderia ambifaria (strain MC40-6) RepID=B1YYM9_BURA4
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KHD22948.1}; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="
Displaying 30 items

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