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scnpilot_expt_750_bf_scaffold_1371

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1371_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1396)
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCS4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36138.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_1371_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1819..2424
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7Z0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36889.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_1371_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2560..2883
DNA (324bp) protein (108aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QFA8_9BRAD
scnpilot_expt_750_bf_scaffold_1371_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3069..3518
DNA (450bp) protein (150aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P5Y6_9BRAD
scnpilot_expt_750_bf_scaffold_1371_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3944..4444
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5Z7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36891.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_1371_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4622..5449
DNA (828bp) protein (276aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMA
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
pyrroline-5-carboxylate reductase n=1 Tax=Afipia birgiae RepID=UPI0003012EC2 rbh
scnpilot_expt_750_bf_scaffold_1371_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5573..6961)
DNA (1389bp) protein (463aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afi
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P2W6_9BRAD rbh
two-component hybrid sensor and regulator
scnpilot_expt_750_bf_scaffold_1371_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6981..7706)
DNA (726bp) protein (242aa)
DNA-binding response regulator PetR n=2 Tax=Bradyrhizobiaceae RepID=F7QFB2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS35080.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
protein PetR
scnpilot_expt_750_bf_scaffold_1371_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7703..8254)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBC0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36895.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
putative transcriptional regulator, MarR family
scnpilot_expt_750_bf_scaffold_1371_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8537..9658
DNA (1122bp) protein (374aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobial
branched-chain amino acid aminotransferase (EC:2.6.1.42)
branched-chain amino acid aminotransferase n=1 Tax=Afipia birgiae RepID=UPI00035F7141 rbh
scnpilot_expt_750_bf_scaffold_1371_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9809..10819)
DNA (1011bp) protein (337aa)
Protein-(Glutamine-N5) methyltransferase, ribosomal protein L3-specific n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEV3_9BRAD rbh
Protein-(Glutamine-N5) methyltransferase, ribosomal protein L3-specific {ECO:0000313|EMBL:EKS36898.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiace
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
scnpilot_expt_750_bf_scaffold_1371_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10819..11289)
DNA (471bp) protein (157aa)
molybdenum cofactor biosynthesis protein MoaE n=1 Tax=Afipia birgiae RepID=UPI0002FF86E7
Molybdopterin converting factor subunit 2 {ECO:0000313|EMBL:EGP10116.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiacea
molybdopterin biosynthesis MoaE
scnpilot_expt_750_bf_scaffold_1371_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11355..11606)
DNA (252bp) protein (84aa)
Molybdopterin converting factor, subunit 1 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBC4_9BRAD
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Af
moaD; molybdenum cofactor biosynthesis protein MoaD
scnpilot_expt_750_bf_scaffold_1371_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11603..12217)
DNA (615bp) protein (205aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA (EC:2.7.8.5)
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P608_9BRAD rbh
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EKS36901.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Af
scnpilot_expt_750_bf_scaffold_1371_15
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12301..14286)
DNA (1986bp) protein (662aa)
UvrABC system protein C n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4Z0N2_BRASO
uvrC; excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_0
scnpilot_expt_750_bf_scaffold_1371_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14543..15169
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEV8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36903.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
outer-membrane immunogenic protein precursor
scnpilot_expt_750_bf_scaffold_1371_17
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15320..15535)
DNA (216bp) protein (72aa)
Cold shock protein CspG n=2 Tax=Bradyrhizobiaceae RepID=F7QFC1_9BRAD
Cold shock protein CspG {ECO:0000313|EMBL:EGP10121.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.
cold-shock DNA-binding domain-containing protein
scnpilot_expt_750_bf_scaffold_1371_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15790..16650)
DNA (861bp) protein (287aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rul
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBC9_9BRAD rbh
hypothetical protein
scnpilot_expt_750_bf_scaffold_1371_19
unknown

Not on your lists

comp(16670..16804)
DNA (135bp) protein (45aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1371_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16825..17577)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P611_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36906.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
ribonuclease T2 family
scnpilot_expt_750_bf_scaffold_1371_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17681..18151)
DNA (471bp) protein (157aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P614_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35095.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
hypothetical protein
scnpilot_expt_750_bf_scaffold_1371_22
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18328..18639
DNA (312bp) protein (104aa)
signal peptide protein n=1 Tax=Afipia birgiae RepID=UPI00035DD589
Uncharacterized protein {ECO:0000313|EMBL:EGP10125.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.
hypothetical protein
scnpilot_expt_750_bf_scaffold_1371_23
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18671..19159
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002D7981A
Uncharacterized protein {ECO:0000313|EMBL:EGP10126.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.
hypothetical protein
scnpilot_expt_750_bf_scaffold_1371_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19199..19417)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBD4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36910.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
scnpilot_expt_750_bf_scaffold_1371_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19529..19924)
DNA (396bp) protein (132aa)
thioesterase n=1 Tax=Afipia birgiae RepID=UPI0002D9FCF1
Uncharacterized protein {ECO:0000313|EMBL:EKS36911.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_1371_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19935..20129)
DNA (195bp) protein (65aa)
4-oxalocrotonate tautomerase family enzyme n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2V6_9BRAD
4-oxalocrotonate tautomerase family enzyme {ECO:0000313|EMBL:EKS36912.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia
4-oxalocrotonate tautomerase
scnpilot_expt_750_bf_scaffold_1371_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20264..21802)
DNA (1539bp) protein (513aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NG57_AFIFE rbh
scnpilot_expt_750_bf_scaffold_1371_28
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21857..23572)
DNA (1716bp) protein (572aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P9P3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS35103.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
hypothetical protein
scnpilot_expt_750_bf_scaffold_1371_29
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23673..24101)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P2Z6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35104.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
hypothetical protein
scnpilot_expt_750_bf_scaffold_1371_30
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24231..25406
DNA (1176bp) protein (392aa)
Omega-amino acid--pyruvate aminotransferase {ECO:0000313|EMBL:EGP10107.1}; EC=2.6.1.18 {ECO:0000313|EMBL:EGP10107.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
beta alanine--pyruvate transaminase (EC:2.6.1.-)
Omega-amino acid--pyruvate aminotransferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QFD7_9BRAD rbh
Displaying 30 items

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