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scnpilot_expt_750_bf_scaffold_1840

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1840_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..194
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Sphingobium indicum B90A RepID=I5B9U9_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD26632.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
scnpilot_expt_750_bf_scaffold_1840_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(247..1641)
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000370FD9D
translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiacea
scnpilot_expt_750_bf_scaffold_1840_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1638..2378)
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037D00B2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB48289.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium ni
scnpilot_expt_750_bf_scaffold_1840_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2413..4068)
DNA (1656bp) protein (552aa)
Transcription elongation factor NusA n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCP8_9RHIZ rbh
transcription elongation factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomic
scnpilot_expt_750_bf_scaffold_1840_5
unknown

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comp(4082..4735)
DNA (654bp) protein (218aa)
Ribosome maturation factor RimP n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JD73_HYPSM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae;
hypothetical protein
scnpilot_expt_750_bf_scaffold_1840_6
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4960..5733)
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IQN3_AZOC5 rbh
enoyl-CoA hydratase
Enoyl-CoA hydratase {ECO:0000313|EMBL:BAF86800.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans
scnpilot_expt_750_bf_scaffold_1840_7
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5791..6663)
DNA (873bp) protein (291aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020854}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYP3_9RHIZ
scnpilot_expt_750_bf_scaffold_1840_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6671..7096)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IC13_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS65556.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrop
scnpilot_expt_750_bf_scaffold_1840_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7275..7457
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JSP5_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ24339.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium den
scnpilot_expt_750_bf_scaffold_1840_10
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(7545..7892)
DNA (348bp) protein (116aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ71196.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
scnpilot_expt_750_bf_scaffold_1840_11
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7939..8220
DNA (282bp) protein (94aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-meth
Ubiquinone/menaquinone biosynthesis methyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SE70_9RHIZ
ubiquinone/menaquinone biosynthesis methyltransferase
scnpilot_expt_750_bf_scaffold_1840_12
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8410..9444
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037CC09B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB47939.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium ni
scnpilot_expt_750_bf_scaffold_1840_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9604..9738)
DNA (135bp) protein (45aa)
Thiamine pyrophosphate enzyme n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN9_9SPHN
thiamine pyrophosphate enzyme
Thiamine pyrophosphate enzyme {ECO:0000313|EMBL:BAK67441.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobiu
Displaying 13 items

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