ggKbase home page

scnpilot_expt_750_bf_scaffold_652

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_652_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

260..1354
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NYG3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS35362.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
hypothetical protein
scnpilot_expt_750_bf_scaffold_652_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1572..3206
DNA (1635bp) protein (545aa)
Conjugal transfer protein TraG n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCL3_9RHIZ rbh
conjugal transfer protein TraG rbh
Conjugal transfer protein TraG {ECO:0000313|EMBL:AHB47709.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicro
scnpilot_expt_750_bf_scaffold_652_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3224..3952
DNA (729bp) protein (243aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltrans
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N1)-methyltransferase n=1 Tax=Afipia birgiae RepID=UPI0002DF6D29 rbh
scnpilot_expt_750_bf_scaffold_652_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4055..4453
DNA (399bp) protein (133aa)
50S ribosomal protein L19 n=2 Tax=Bradyrhizobiaceae RepID=F7QHQ2_9BRAD
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" sourc
rplS; 50S ribosomal protein L19
scnpilot_expt_750_bf_scaffold_652_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4532..4945)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2D2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34869.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
glyoxalase/bleomycin resistance
scnpilot_expt_750_bf_scaffold_652_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5081..6490
DNA (1410bp) protein (470aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM i
leuC; isopropylmalate isomerase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHQ0_9BRAD rbh
scnpilot_expt_750_bf_scaffold_652_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6566..6922)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E0C513
Uncharacterized protein {ECO:0000313|EMBL:EKS34867.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_652_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8017..8415
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2C7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34864.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_652_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8497..8871
DNA (375bp) protein (125aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate is
3-isopropylmalate dehydratase small subunit n=2 Tax=Bradyrhizobiaceae RepID=F7QHP4_9BRAD
leuD; isopropylmalate isomerase small subunit
scnpilot_expt_750_bf_scaffold_652_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8955..9053
DNA (99bp) protein (33aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate is
isopropylmalate isomerase n=1 Tax=Afipia birgiae RepID=UPI0003086668
scnpilot_expt_750_bf_scaffold_652_11
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9214..10095)
DNA (882bp) protein (294aa)
L-malyl-CoA/beta-methylmalyl-CoA lyase {ECO:0000313|EMBL:EGP09298.1}; EC=4.1.3.- {ECO:0000313|EMBL:EGP09298.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brady
citrate lyase subunit beta (EC:4.1.3.34)
L-malyl-CoA/beta-methylmalyl-CoA lyase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHP3_9BRAD rbh
scnpilot_expt_750_bf_scaffold_652_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10243..10947
DNA (705bp) protein (235aa)
carbonate dehydratase n=1 Tax=Afipia birgiae RepID=UPI000300455E rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34860.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
carbonate dehydratase
scnpilot_expt_750_bf_scaffold_652_13
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11017..12051)
DNA (1035bp) protein (345aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501}; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121, ECO
Aspartate-semialdehyde dehydrogenase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0S9J8_9BRAD rbh
asd; aspartate-semialdehyde dehydrogenase
scnpilot_expt_750_bf_scaffold_652_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12258..13082
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NX06_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34857.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_652_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13095..13832
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NRW9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS33117.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
scnpilot_expt_750_bf_scaffold_652_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13959..14336
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5B4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34855.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_652_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14475..15587)
DNA (1113bp) protein (371aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|H
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P929_9BRAD rbh
scnpilot_expt_750_bf_scaffold_652_18
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16026..17993
DNA (1968bp) protein (656aa)
Cold-shock dead-box protein A n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89IS2_BRADU rbh
DEAD/DEAH box helicase {ECO:0000313|EMBL:KJC33705.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
deaD; cold-shock dead-box protein A
scnpilot_expt_750_bf_scaffold_652_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18102..19280
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NX03_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34852.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
major facilitator transporter
scnpilot_expt_750_bf_scaffold_652_20
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19405..20190)
DNA (786bp) protein (262aa)
molybdopterin binding oxidoreductase n=1 Tax=Afipia birgiae RepID=UPI0002E0AA63 rbh
Sulfite oxidase-like protein {ECO:0000313|EMBL:EGP09285.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium S
hypothetical protein
scnpilot_expt_750_bf_scaffold_652_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20355..21005)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0A7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS33110.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
hypothetical protein
scnpilot_expt_750_bf_scaffold_652_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21327..21899)
DNA (573bp) protein (191aa)
fasciclin n=1 Tax=Afipia birgiae RepID=UPI00036FD4D5 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34845.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
beta-Ig-H3/fasciclin
scnpilot_expt_750_bf_scaffold_652_23
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22198..22953)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NRW0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS33107.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
oxidoreductase
scnpilot_expt_750_bf_scaffold_652_24
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23029..24555
DNA (1527bp) protein (509aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EGP09279.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EGP09279.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizo
Long-chain-fatty-acid--CoA ligase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHM4_9BRAD rbh
malonyl-CoA synthase
scnpilot_expt_750_bf_scaffold_652_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24842..25702)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P093_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34841.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_652_26
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26015..26374
DNA (360bp) protein (120aa)
Succinate dehydrogenase subunit C {ECO:0000313|EMBL:ABE64344.1}; EC=1.3.5.1 {ECO:0000313|EMBL:ABE64344.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizo
succinate dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI0002D711EE
succinate dehydrogenase, cytochrome b subunit
scnpilot_expt_750_bf_scaffold_652_27
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26371..26763
DNA (393bp) protein (131aa)
succinate dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI0002E46FEB
Succinate dehydrogenase hydrophobic membrane anchor protein {ECO:0000313|EMBL:EGP09275.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source
succinate dehydrogenase, cytochrome b subunit
scnpilot_expt_750_bf_scaffold_652_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26767..28590
DNA (1824bp) protein (608aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobia
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1)
Succinate dehydrogenase flavoprotein subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P916_9BRAD rbh
scnpilot_expt_750_bf_scaffold_652_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28731..29513
DNA (783bp) protein (261aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobial
sdhB; succinate dehydrogenase iron-sulfur subunit (EC:1.3.99.1)
Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NWZ0_9BRAD rbh
scnpilot_expt_750_bf_scaffold_652_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29748..30077
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P596_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34830.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
cycS; putative cytochrome C6 precursor
Displaying items 1-30 of 40 in total

View Taxonomy