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scnpilot_expt_750_bf_scaffold_995

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_995_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..605
DNA (603bp) protein (201aa)
yeaU; tartrate dehydrogenase (EC:1.1.1.83 1.1.1.93 4.1.1.73)
Tartrate dehydrogenase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9K9_9BRAD
Tartrate dehydrogenase {ECO:0000313|EMBL:EKS38211.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.
scnpilot_expt_750_bf_scaffold_995_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

879..1244
DNA (366bp) protein (122aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit
nuoA; NADH-quinone oxidoreductase subunit A (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit A n=1 Tax=Afipia broomeae ATCC 49717 PF64_9BRAD">RepID=K8PF64_9BRAD
scnpilot_expt_750_bf_scaffold_995_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1235..1828
DNA (594bp) protein (198aa)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit
nuoB; NADH-quinone oxidoreductase subunit B (EC:1.6.99.5)
NADH dehydrogenase subunit B n=1 Tax=Afipia birgiae RepID=UPI0002DF2767 rbh
scnpilot_expt_750_bf_scaffold_995_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1849..2487
DNA (639bp) protein (213aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit
NADH dehydrogenase subunit C (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit C n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PL94_9BRAD rbh
scnpilot_expt_750_bf_scaffold_995_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2487..3695
DNA (1209bp) protein (403aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit
NADH-quinone oxidoreductase subunit D n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6I6_9BRAD rbh
NADH dehydrogenase subunit D
scnpilot_expt_750_bf_scaffold_995_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3762..4535
DNA (774bp) protein (258aa)
nuoE; NADH-quinone oxidoreductase subunit E 1 (EC:1.6.99.5)
NADH-quinone oxidoreductase, E subunit n=1 Tax=Afipia broomeae ATCC 49717 PF59_9BRAD">RepID=K8PF59_9BRAD rbh
NADH-quinone oxidoreductase, E subunit {ECO:0000313|EMBL:EKS38205.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broo
scnpilot_expt_750_bf_scaffold_995_7
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4493..5122)
DNA (630bp) protein (210aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
hypothetical protein CfetvA_00317, partial id=1326637 bin=GWE1_T_denit_62_9 species=Campylobacter fetus genus=Campylobacter taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
scnpilot_expt_750_bf_scaffold_995_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5363..5914
DNA (552bp) protein (184aa)
NADH-quinone oxidoreductase, F subunit {ECO:0000313|EMBL:EFI50208.1}; EC=1.6.99.5 {ECO:0000313|EMBL:EFI50208.1};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brad
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5)
NADH dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI00030137FE
scnpilot_expt_750_bf_scaffold_995_9
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5920..7998
DNA (2079bp) protein (693aa)
NADH-ubiquinone oxidoreductase chain G {ECO:0000313|EMBL:EGP08124.1}; EC=1.6.5.3 {ECO:0000313|EMBL:EGP08124.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brady
NADH dehydrogenase subunit G n=1 Tax=Afipia birgiae RepID=UPI000380E526 rbh
nuoG; NADP ubiquinone oxidoreductase chain G
scnpilot_expt_750_bf_scaffold_995_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8009..9079
DNA (1071bp) protein (357aa)
NADH dehydrogenase subunit H (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; NDH-1 subunit
NADH-quinone oxidoreductase subunit H n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=NUOH_NITHX rbh
scnpilot_expt_750_bf_scaffold_995_11
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9087..9575
DNA (489bp) protein (163aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit
nuoI; NADH dehydrogenase subunit I (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit I n=2 Tax=Bradyrhizobiaceae RepID=F7QMC3_9BRAD rbh
scnpilot_expt_750_bf_scaffold_995_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9585..10103
DNA (519bp) protein (173aa)
nuoJ; NADH dehydrogenase subunit J (EC:1.6.5.3)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBV2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38199.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
scnpilot_expt_750_bf_scaffold_995_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10105..10413
DNA (309bp) protein (103aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit
nuoK; NADH dehydrogenase subunit K (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit K n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PLA2_9BRAD
scnpilot_expt_750_bf_scaffold_995_14
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10421..12508
DNA (2088bp) protein (696aa)
NADH-ubiquinone oxidoreductase chain L {ECO:0000313|EMBL:EGP08129.1}; EC=1.6.5.3 {ECO:0000313|EMBL:EGP08129.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brady
NADH dehydrogenase subunit L (EC:1.6.99.5) rbh
NADH-ubiquinone oxidoreductase chain L n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMC6_9BRAD rbh
scnpilot_expt_750_bf_scaffold_995_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12508..14019
DNA (1512bp) protein (504aa)
NADH:ubiquinone oxidoreductase subunit M n=1 Tax=Afipia birgiae RepID=UPI00035C7D05 rbh
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:EKS38196.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;"
NADH dehydrogenase subunit M
scnpilot_expt_750_bf_scaffold_995_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14036..15463
DNA (1428bp) protein (476aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit
NADH dehydrogenase subunit N (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit N n=1 Tax=Afipia broomeae ATCC 49717 PF48_9BRAD">RepID=K8PF48_9BRAD rbh
scnpilot_expt_750_bf_scaffold_995_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15463..16272
DNA (810bp) protein (270aa)
biotin n=1 Tax=Afipia birgiae RepID=UPI0002FAFA88 rbh
Biotin-[acetyl-CoA-carboxylase] ligase {ECO:0000313|EMBL:EKS38194.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broo
biotin--acetyl-CoA-carboxylase ligase
scnpilot_expt_750_bf_scaffold_995_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16274..17944
DNA (1671bp) protein (557aa)
beta-lactamase n=1 Tax=Afipia birgiae RepID=UPI0002DC196F rbh
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:EGP08133.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae ba
metallo-beta-lactamase family hydrolase
scnpilot_expt_750_bf_scaffold_995_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17968..18372
DNA (405bp) protein (135aa)
Methylmalonyl-CoA epimerase n=2 Tax=Bradyrhizobiaceae RepID=F7QMD1_9BRAD
Methylmalonyl-CoA epimerase {ECO:0000313|EMBL:EKS40281.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis
putative glyoxalase I family protein
scnpilot_expt_750_bf_scaffold_995_20
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18374..18649
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMD2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP08135.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.
hypothetical protein
scnpilot_expt_750_bf_scaffold_995_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19084..21258)
DNA (2175bp) protein (725aa)
ligand-gated channel protein n=1 Tax=Afipia birgiae RepID=UPI000313F78A rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS40284.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
TonB-dependent receptor
scnpilot_expt_750_bf_scaffold_995_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21317..21697)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBT8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38189.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_995_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21876..22838
DNA (963bp) protein (321aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00010700}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:000025
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIJ5_9BRAD
scnpilot_expt_750_bf_scaffold_995_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22950..23195
DNA (246bp) protein (82aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00010700}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:000025
proS; proline-tRNA ligase ProS (EC:6.1.1.15)
prolyl-tRNA synthetase n=1 Tax=Afipia birgiae RepID=UPI0002F543D4
scnpilot_expt_750_bf_scaffold_995_25
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23334..24164
DNA (831bp) protein (277aa)
LolC/E family lipoprotein releasing system, transmembrane protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PFH9_9BRAD
LolC/E family lipoprotein releasing system, transmembrane protein {ECO:0000313|EMBL:EKS40291.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Af
LolC/E family lipoprotein releasing system, transmembrane protein
Displaying 25 items

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