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scnpilot_expt_750_bf_scaffold_6305

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_6305_1
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..781
DNA (780bp) protein (260aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_0100
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036B7712
16S rRNA methyltransferase
scnpilot_expt_750_bf_scaffold_6305_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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963..1241
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SHY4_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB49660.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium ni
scnpilot_expt_750_bf_scaffold_6305_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1238..2941
DNA (1704bp) protein (568aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003811233 rbh
peptidoglycan glycosyltransferase
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:AHB49661.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomi
scnpilot_expt_750_bf_scaffold_6305_4
unknown

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comp(3105..3437)
DNA (333bp) protein (111aa)
Molybdopterin-converting factor subunit 2 (MPT synthase subunit 2) (Molybdopterin synthase subunit 2) (Molybdenum cofactor biosynthesis protein E) (Molybdopterin-converting factor large subunit) n=1 Tax=mine drainage metagenome RepID=E6PS11_9ZZZZ
Molybdopterin synthase, large subunit {ECO:0000313|EMBL:CPR14801.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filo
molybdopterin biosynthesis MoaE
scnpilot_expt_750_bf_scaffold_6305_5
unknown

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comp(3442..3699)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003651222
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" so
molybdenum cofactor biosynthesis protein MoaD
scnpilot_expt_750_bf_scaffold_6305_6
unknown

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comp(3696..3797)
DNA (102bp) protein (34aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_6305_7
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3837..4427)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036624A7
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:AHB48157.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae;
scnpilot_expt_750_bf_scaffold_6305_8
unknown

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comp(4559..6028)
DNA (1470bp) protein (490aa)
phosphoglucomutase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000378102E rbh
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II {ECO:0000313|EMBL:CPR21906.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Fi
phosphoglucomutase rbh
scnpilot_expt_750_bf_scaffold_6305_9
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6210..6638)
DNA (429bp) protein (143aa)
UPI00013B53F5 related cluster n=1 Tax=unknown RepID=UPI00013B53F5
DctM family transporter Tax=CG_Rhodocyc_01
mannitol transporter
scnpilot_expt_750_bf_scaffold_6305_10
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7434..8042)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI0002DF1004
tripartite ATP-independent periplasmic transporter, DctQ family Tax=CG_Rhodocyc_01
tripartite ATP-independent periplasmic transporter, DctQ family
scnpilot_expt_750_bf_scaffold_6305_11
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8171..9292)
DNA (1122bp) protein (374aa)
Trap-type mannitol/chloroaromatic compound transport system, periplasmic component n=1 Tax=Ahrensia sp. R2A130 RepID=E0MQS0_9RHOB rbh
hypothetical protein Tax=CG_Rhodocyc_01
hypothetical protein
scnpilot_expt_750_bf_scaffold_6305_12
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9676..9834)
DNA (159bp) protein (53aa)
gap; NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.13)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacter
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M789_METRJ
Displaying 12 items

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