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scnpilot_expt_750_bf_scaffold_3136

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_3136_1
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(89..847)
DNA (759bp) protein (253aa)
Putative transmembrane transcriptional regulator (Anti-sigma factor) n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKK1_9RHIZ
Putative transmembrane transcriptional regulator (Anti-sigma factor) {ECO:0000313|EMBL:EIM24493.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriacea
putative transmembrane anti-sigma factor
scnpilot_expt_750_bf_scaffold_3136_2
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(837..1370)
DNA (534bp) protein (178aa)
RNA polymerase sigma factor n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0002DB95B8
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia
RNA polymerase sigma factor, sigma-70 family protein
scnpilot_expt_750_bf_scaffold_3136_3
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1836..2690
DNA (855bp) protein (285aa)
Formate/nitrite transporter n=1 Tax=Rhodobacter sp. SW2 RepID=C8RZU0_9RHOB
transporter, formate/nitrate family
Tax=BJP_IG2158_Rhodobacterales_69_12
scnpilot_expt_750_bf_scaffold_3136_4
unknown

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comp(2729..3193)
DNA (465bp) protein (155aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_3136_5
unknown

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comp(3190..3564)
DNA (375bp) protein (125aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_3136_6
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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4406..4879
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037E9EE0
(2Fe-2S)-binding protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
(2Fe-2S)-binding domain-containing protein
scnpilot_expt_750_bf_scaffold_3136_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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4876..6978
DNA (2103bp) protein (701aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036FD193 rbh
Isoquinoline 1-oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Isoquinoline 1-oxidoreductase
scnpilot_expt_750_bf_scaffold_3136_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7007..7621)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000370793A
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABJ08587.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="R
scnpilot_expt_750_bf_scaffold_3136_9
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7802..8875
DNA (1074bp) protein (358aa)
Glycoside hydrolase family 43 n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XHD1_9RHIZ rbh
Glycoside hydrolase family 43 {ECO:0000313|EMBL:ERI14320.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. E
secretion protein HlyD
scnpilot_expt_750_bf_scaffold_3136_10
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8872..9234
DNA (363bp) protein (121aa)
ABC transporter, ATP-binding protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A1T8_9PROT
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:EXL05436.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" sourc
ABC transporter-like protein
Displaying 10 items

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