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scnpilot_expt_750_bf_scaffold_3155

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_3155_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..212
DNA (210bp) protein (70aa)
rseP; RIP metalloprotease RseP (EC:3.4.24.-)
zinc metalloprotease n=1 Tax=Afipia birgiae RepID=UPI00036D278E
RIP metalloprotease RseP {ECO:0000313|EMBL:EKS40304.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATC
scnpilot_expt_750_bf_scaffold_3155_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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384..2918
DNA (2535bp) protein (845aa)
Outer membrane protein assembly factor BamA n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PLC9_9BRAD rbh
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rh
surface antigen (D15)
scnpilot_expt_750_bf_scaffold_3155_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3290..3790
DNA (501bp) protein (167aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobi
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD (EC:2.3.1.-)
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6F0_9BRAD
scnpilot_expt_750_bf_scaffold_3155_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3790..4248
DNA (459bp) protein (153aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-)
3-hydroxyacyl-ACP dehydratase n=1 Tax=Afipia birgiae RepID=UPI0002FBF6FB rbh
scnpilot_expt_750_bf_scaffold_3155_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4263..5084
DNA (822bp) protein (274aa)
UDP-N-acetylglucosamine acyltransferase (EC:2.3.1.129)
UDP-N-acetylglucosamine acyltransferase n=1 Tax=Afipia birgiae RepID=UPI00031F700D rbh
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00064156}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMA
scnpilot_expt_750_bf_scaffold_3155_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5084..5593
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030F1C13
Uncharacterized protein {ECO:0000313|EMBL:EKS38169.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_3155_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5544..5861
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBQ7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38169.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_3155_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5858..7033
DNA (1176bp) protein (392aa)
Lipid-A-disaccharide synthase {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200}; EC=2.4.1.182 {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200};; TaxID=883078 species="Ba
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIH0_9BRAD rbh
scnpilot_expt_750_bf_scaffold_3155_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7138..8442)
DNA (1305bp) protein (435aa)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhiz
gltA; type II citrate synthase (EC:2.3.3.1)
type II citrate synthase n=1 Tax=Afipia birgiae RepID=UPI0002F26510 rbh
scnpilot_expt_750_bf_scaffold_3155_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8619..10046)
DNA (1428bp) protein (476aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=883078 species="Bacteria; Pr
gltX; glutamine-tRNA ligase GltX (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9G4_9BRAD rbh
scnpilot_expt_750_bf_scaffold_3155_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10228..10809
DNA (582bp) protein (194aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:
glnS; glutamine-tRNA ligase GlnS (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NHZ0_AFIFE
Displaying 11 items

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