ggKbase home page

scnpilot_expt_750_bf_scaffold_3427

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_3427_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..287
DNA (285bp) protein (95aa)
GTPase Der n=2 Tax=Rhodopseudomonas palustris RepID=DER_RHOPA
engA; GTP-binding protein EngA
GTPase Der {ECO:0000255|HAMAP-Rule:MF_00195}; GTP-binding protein EngA {ECO:0000255|HAMAP-Rule:MF_00195}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobi
scnpilot_expt_750_bf_scaffold_3427_2
unknown

Not on your lists

comp(325..942)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000366CF4D
scnpilot_expt_750_bf_scaffold_3427_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1006..2112
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDD1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39571.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_3427_4
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2269..2766
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003698B0E
Uncharacterized protein {ECO:0000313|EMBL:EJZ34522.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
hypothetical protein
scnpilot_expt_750_bf_scaffold_3427_5
Asticcacaulis biprosthecium, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2832..4346)
DNA (1515bp) protein (505aa)
Capsular polysaccharide biosynthesis protein CapK n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QSJ9_9CAUL
Capsular polysaccharide biosynthesis protein CapK {ECO:0000313|EMBL:EGF89719.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;
conserved protein of unknown function
scnpilot_expt_750_bf_scaffold_3427_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4506..5252)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFP0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39574.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
short-chain dehydrogenase/reductase SDR
scnpilot_expt_750_bf_scaffold_3427_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5482..5958
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ62_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39575.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
acetyltransferase
scnpilot_expt_750_bf_scaffold_3427_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5972..6607
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PLH0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42431.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
type 12 methyltransferase
scnpilot_expt_750_bf_scaffold_3427_9
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6620..7288)
DNA (669bp) protein (223aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLZ3_9BRAD
scnpilot_expt_750_bf_scaffold_3427_10
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7263..8069)
DNA (807bp) protein (269aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLZ3_9BRAD
scnpilot_expt_750_bf_scaffold_3427_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8113..8757)
DNA (645bp) protein (215aa)
colicin V synthesis protein n=1 Tax=Afipia birgiae RepID=UPI0002F2D222 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39577.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
putative colicin V production protein
scnpilot_expt_750_bf_scaffold_3427_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9004..10446)
DNA (1443bp) protein (481aa)
DNA repair protein RadA n=1 Tax=Afipia birgiae RepID=UPI0002E46D24 rbh
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 497
DNA repair protein RadA
scnpilot_expt_750_bf_scaffold_3427_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10709..11281
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFP6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39579.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
NHL repeat containing protein
scnpilot_expt_750_bf_scaffold_3427_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11223..11720
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030BA837
Uncharacterized protein {ECO:0000313|EMBL:EKS39579.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
NHL repeat-containing protein
scnpilot_expt_750_bf_scaffold_3427_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11848..12606)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003139438 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42435.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
hypothetical protein
scnpilot_expt_750_bf_scaffold_3427_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12619..13764)
DNA (1146bp) protein (382aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; TaxID=883079 species="Bacteria; Proteob
alr; alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PLH3_9BRAD rbh
scnpilot_expt_750_bf_scaffold_3427_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13851..15425)
DNA (1575bp) protein (525aa)
dnaB; replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAE1_9BRAD
Replicative DNA helicase {ECO:0000313|EMBL:EKS39582.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 4971
scnpilot_expt_750_bf_scaffold_3427_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15478..16737)
DNA (1260bp) protein (420aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PMH5_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39583.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
scnpilot_expt_750_bf_scaffold_3427_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17007..17882
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00035E6D0C rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42442.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
hypothetical protein
scnpilot_expt_750_bf_scaffold_3427_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17970..18569)
DNA (600bp) protein (200aa)
50S ribosomal protein L9 n=1 Tax=Afipia birgiae RepID=UPI000310093B rbh
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC
rplI; 50S ribosomal protein L9
scnpilot_expt_750_bf_scaffold_3427_21
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18626..19585)
DNA (960bp) protein (320aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI0002F7632E rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP08011.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.
hypothetical protein
scnpilot_expt_750_bf_scaffold_3427_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19724..19963)
DNA (240bp) protein (80aa)
30S ribosomal protein S18 n=4 Tax=Bradyrhizobiaceae RepID=RS18_RHOPB
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000255|HAMAP-Rule:MF_00270}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseud
scnpilot_expt_750_bf_scaffold_3427_23
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19969..20334)
DNA (366bp) protein (122aa)
30S ribosomal protein S6 n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=RS6_RHOP5
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
30S ribosomal protein S6
scnpilot_expt_750_bf_scaffold_3427_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20618..21835)
DNA (1218bp) protein (406aa)
Diguanylate cyclase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LE3_RHOP5 rbh
diguanylate cyclase rbh
Diguanylate cyclase {ECO:0000313|EMBL:ABJ07241.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas pal
Displaying 24 items

View Taxonomy