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scnpilot_expt_750_bf_scaffold_2454

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2454_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(220..690)
DNA (471bp) protein (157aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rR
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Rhodanobacter denitrificans RepID=M4NED8_9GAMM
rRNA large subunit m3Psi methyltransferase RlmH
scnpilot_expt_750_bf_scaffold_2454_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(800..1186)
DNA (387bp) protein (129aa)
Ribosomal silencing factor RsfS n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ85_9GAMM
iojap-like ribosome-associated protein Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
iojap-like ribosome-associated protein
scnpilot_expt_750_bf_scaffold_2454_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1289..2356)
DNA (1068bp) protein (356aa)
Putative oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5P0_9GAMM rbh
Putative oxidoreductase {ECO:0000313|EMBL:EIL94781.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
2-nitropropane dioxygenase-like enzyme
scnpilot_expt_750_bf_scaffold_2454_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2420..2608)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ83_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01625.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
pentapeptide MXKDX repeat protein
scnpilot_expt_750_bf_scaffold_2454_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2704..3207)
DNA (504bp) protein (168aa)
Putative membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTG8_9GAMM
hypothetical protein Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_2454_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3343..3618)
DNA (276bp) protein (92aa)
Acetyltransferase-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5N7_9GAMM
putative acetyltransferase
Acetyltransferase-like protein {ECO:0000313|EMBL:EIL94778.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanob
scnpilot_expt_750_bf_scaffold_2454_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3761..4186
DNA (426bp) protein (142aa)
Osmotically inducible protein OsmC n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5N6_9GAMM
Osmotically inducible protein OsmC {ECO:0000313|EMBL:EIL94777.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhod
peroxiredoxin, OsmC subfamily
scnpilot_expt_750_bf_scaffold_2454_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4188..5270)
DNA (1083bp) protein (361aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTG5_9GAMM rbh
scnpilot_expt_750_bf_scaffold_2454_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5503..6438
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NCD0_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88294.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
scnpilot_expt_750_bf_scaffold_2454_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6533..8311
DNA (1779bp) protein (593aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhod
Nuclease-like protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFA7_9GAMM rbh
nuclease-like protein
scnpilot_expt_750_bf_scaffold_2454_11
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8446..9018)
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034DE965
Relaxation protein {ECO:0000313|EMBL:EYR68777.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78
relaxation protein
scnpilot_expt_750_bf_scaffold_2454_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9050..10471)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VR87_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL89728.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter f
hypothetical protein rbh
scnpilot_expt_750_bf_scaffold_2454_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10496..11104)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VR88_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89729.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter f
hypothetical protein
scnpilot_expt_750_bf_scaffold_2454_14
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11316..11939
DNA (624bp) protein (208aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQB1_PSEUU
CDP-alcohol phosphatidyltransferase
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:ADV26360.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="
scnpilot_expt_750_bf_scaffold_2454_15
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11936..12535
DNA (600bp) protein (200aa)
acyltransferase n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00036DBFE5
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:EGK71505.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Me
phospholipid/glycerol acyltransferase
scnpilot_expt_750_bf_scaffold_2454_16
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12532..13518
DNA (987bp) protein (329aa)
Phosphatidate cytidylyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQA9_PSEUU rbh
phosphatidate cytidylyltransferase
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:ADV26358.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="P
scnpilot_expt_750_bf_scaffold_2454_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13394..14026)
DNA (633bp) protein (211aa)
nicotinate/nicotinamide nucleotide adenylyltransferase (EC:2.7.7.18) Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
nicotinate/nicotinamide nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQM3_9GAMM
scnpilot_expt_750_bf_scaffold_2454_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14067..14945)
DNA (879bp) protein (293aa)
DNA polymerase III, delta subunit (EC:2.7.7.7) Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III subunit delta n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJC7_9GAMM rbh
scnpilot_expt_750_bf_scaffold_2454_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14945..15478)
DNA (534bp) protein (178aa)
Rare lipoprotein B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQM1_9GAMM
LPS-assembly lipoprotein LptE {ECO:0000256|HAMAP-Rule:MF_01186, ECO:0000256|SAAS:SAAS00074334}; Flags: Precursor;; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales
Rare lipoprotein B
scnpilot_expt_750_bf_scaffold_2454_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15484..18255)
DNA (2772bp) protein (924aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1163407 species="Bacteria; Proteo
leuS; leucine--tRNA ligase (EC:6.1.1.4)
leucyl-tRNA synthetase n=1 Tax=Dyella japonica RepID=UPI0002FBE437 rbh
scnpilot_expt_750_bf_scaffold_2454_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18370..18978)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQL9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01761.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
hypothetical protein
scnpilot_expt_750_bf_scaffold_2454_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18975..20579)
DNA (1605bp) protein (535aa)
PqiB family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQL8_9GAMM rbh
PqiB family protein {ECO:0000313|EMBL:EIM01760.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thioo
qaraquat-inducible protein B
scnpilot_expt_750_bf_scaffold_2454_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20576..21196)
DNA (621bp) protein (207aa)
Putative paraquat-inducible protein A n=1 Tax=Rhodanobacter denitrificans RepID=I4WTF2_9GAMM
Putative paraquat-inducible protein A {ECO:0000313|EMBL:EIM01759.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="R
putative paraquat-inducible protein A
scnpilot_expt_750_bf_scaffold_2454_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21193..21840)
DNA (648bp) protein (216aa)
Putative paraquat-inducible protein A n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQL6_9GAMM rbh
Putative paraquat-inducible protein A {ECO:0000313|EMBL:EIM01758.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="R
putative paraquat-inducible protein A
scnpilot_expt_750_bf_scaffold_2454_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21960..22829
DNA (870bp) protein (290aa)
Thioredoxin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5L6_9GAMM rbh
Thioredoxin {ECO:0000313|EMBL:EIL94757.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli
thioredoxin
scnpilot_expt_750_bf_scaffold_2454_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23015..23467
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5L5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94756.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_expt_750_bf_scaffold_2454_27
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23578..24222)
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003474E9D
Uncharacterized protein {ECO:0000313|EMBL:KGI78362.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas s
hypothetical protein
scnpilot_expt_750_bf_scaffold_2454_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24225..24743)
DNA (519bp) protein (173aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5L3_9GAMM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EIL94754.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rh
scnpilot_expt_750_bf_scaffold_2454_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25054..27855
DNA (2802bp) protein (934aa)
Putative lipoprotein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD71_9GAMM
Putative lipoprotein {ECO:0000313|EMBL:EIL97412.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thio
Zinc carboxypeptidase
scnpilot_expt_750_bf_scaffold_2454_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27898..29517)
DNA (1620bp) protein (540aa)
aminopeptidase n=1 Tax=Dyella ginsengisoli RepID=UPI00034A12BC rbh
Peptidase M28 {ECO:0000313|EMBL:EIL97413.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans
putative aminopeptidase
Displaying 30 items

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