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scnpilot_expt_750_bf_scaffold_1103

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1103_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..979
DNA (978bp) protein (326aa)
3-oxoacyl-(Acyl carrier protein) synthase I n=1 Tax=Rhodanobacter denitrificans RepID=I4WMV7_9GAMM rbh
3-oxoacyl-(acyl-carrier-protein) synthase
3-oxoacyl-(Acyl-carrier-protein) synthase {ECO:0000313|EMBL:AGG90817.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhod
scnpilot_expt_750_bf_scaffold_1103_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1676..2437
DNA (762bp) protein (254aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMV9_9GAMM rbh
glycosyl transferase Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
glycosyl transferase
scnpilot_expt_750_bf_scaffold_1103_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2494..3255)
DNA (762bp) protein (254aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWJ4_9GAMM rbh
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:EIL91585.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source
cAMP-binding protein
scnpilot_expt_750_bf_scaffold_1103_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3291..4709)
DNA (1419bp) protein (473aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xa
Coproporphyrinogen-III oxidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE57_9GAMM rbh
oxygen-independent coproporphyrinogen III oxidase
scnpilot_expt_750_bf_scaffold_1103_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4965..5951)
DNA (987bp) protein (329aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU3_9GAMM rbh
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:EIL92384.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rho
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
scnpilot_expt_750_bf_scaffold_1103_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5989..7281)
DNA (1293bp) protein (431aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:000025
homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU5_9GAMM rbh
scnpilot_expt_750_bf_scaffold_1103_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7427..7726)
DNA (300bp) protein (100aa)
Endonuclease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE60_9GAMM
Endonuclease {ECO:0000313|EMBL:EIL97751.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans
tRNA/rRNA methyltransferase
scnpilot_expt_750_bf_scaffold_1103_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7874..8968)
DNA (1095bp) protein (365aa)
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU6_9GAMM rbh
4-hydroxyphenylpyruvate dioxygenase Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
4-hydroxyphenylpyruvate dioxygenase
scnpilot_expt_750_bf_scaffold_1103_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9076..9537
DNA (462bp) protein (154aa)
MarR family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE62_9GAMM
transcriptional regulator Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
transcriptional regulator
scnpilot_expt_750_bf_scaffold_1103_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9635..11143)
DNA (1509bp) protein (503aa)
Amino acid/peptide transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB6_9GAMM rbh
Amino acid/peptide transporter {ECO:0000313|EMBL:EIL99907.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanob
amino acid/peptide transporter (peptide:H symporter)
scnpilot_expt_750_bf_scaffold_1103_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11328..12830)
DNA (1503bp) protein (501aa)
Amino acid/peptide transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE68_9GAMM rbh
Amino acid/peptide transporter {ECO:0000313|EMBL:EIL97759.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanob
amino acid/peptide transporter (peptide:H symporter)
scnpilot_expt_750_bf_scaffold_1103_12
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13008..13718
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F18891
ArsR family transcriptional regulator
ArsR family transcriptional regulator {ECO:0000313|EMBL:AIF45904.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella j
scnpilot_expt_750_bf_scaffold_1103_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13733..14236)
DNA (504bp) protein (168aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAM
Tryptophan 2,3-dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMG2_9GAMM
tryptophan 2,3-dioxygenase (vermilion)
scnpilot_expt_750_bf_scaffold_1103_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14865..15950
DNA (1086bp) protein (362aa)
Pyruvate dehydrogenase E1 alpha subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB3_9GAMM rbh
Pyruvate dehydrogenase E1 alpha subunit {ECO:0000313|EMBL:EIL99904.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source=
pyruvate dehydrogenase
scnpilot_expt_750_bf_scaffold_1103_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15954..16934
DNA (981bp) protein (327aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYV2_9GAMM rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit {ECO:0000313|EMBL:EIL92393.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales
2-oxoisovalerate dehydrogenase
scnpilot_expt_750_bf_scaffold_1103_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17046..18362
DNA (1317bp) protein (439aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY8_9GAMM
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component {ECO:0000313|EMBL:AGG87698.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomona
scnpilot_expt_750_bf_scaffold_1103_17
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18834..19607
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B760E5 rbh
Membrane protein {ECO:0000313|EMBL:EZH73280.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
hypothetical membrane protein
scnpilot_expt_750_bf_scaffold_1103_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19696..20340)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NCZ3_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87697.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
scnpilot_expt_750_bf_scaffold_1103_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20343..20861)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE74_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL97765.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
putative metal-dependent hydrolase
scnpilot_expt_750_bf_scaffold_1103_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20940..23168)
DNA (2229bp) protein (743aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYV9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL92400.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_expt_750_bf_scaffold_1103_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23331..23654)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMH1_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87692.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
scnpilot_expt_750_bf_scaffold_1103_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23712..25073)
DNA (1362bp) protein (454aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {EC
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE79_9GAMM rbh
scnpilot_expt_750_bf_scaffold_1103_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25180..26094)
DNA (915bp) protein (305aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanob
arginase (EC:3.5.3.1)
Arginase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYW3_9GAMM rbh
scnpilot_expt_750_bf_scaffold_1103_24
unknown

Not on your lists

comp(26582..26782)
DNA (201bp) protein (67aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1103_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26883..27125)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87688.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
scnpilot_expt_750_bf_scaffold_1103_trna_1
unknown

Not on your lists

comp(27296..27368)
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_1103_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27406..28002)
DNA (597bp) protein (199aa)
Sporulation domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE84_9GAMM
Sporulation domain-containing protein {ECO:0000313|EMBL:EIL97775.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="R
sporulation related protein
scnpilot_expt_750_bf_scaffold_1103_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28035..28796)
DNA (762bp) protein (254aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-R
Type III pantothenate kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE85_9GAMM rbh
pantothenate kinase, type III
scnpilot_expt_750_bf_scaffold_1103_28
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28793..29773)
DNA (981bp) protein (327aa)
Biotin-(Acetyl-CoA-carboxylase) ligase BirA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE86_9GAMM
birA, biotin-(acetyl-CoA-carboxylase) ligase Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
birA, biotin-(acetyl-CoA-carboxylase) ligase
scnpilot_expt_750_bf_scaffold_1103_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29971..30288
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE87_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97778.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
hypothetical protein
Displaying items 1-30 of 32 in total

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