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scnpilot_expt_750_bf_scaffold_1652

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1652_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..397)
DNA (396bp) protein (132aa)
Ribonuclease G n=1 Tax=Rhodanobacter denitrificans RepID=I4WKU7_9GAMM
ribonuclease, Rne/Rng family
Ribonuclease, Rne/Rng family {ECO:0000313|EMBL:AGG88168.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobact
scnpilot_expt_750_bf_scaffold_1652_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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561..1253
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ31_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL92472.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
PP-loop superfamily ATP-utilizing enzyme
scnpilot_expt_750_bf_scaffold_1652_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1237..1752
DNA (516bp) protein (172aa)
G:T/U mismatch-specific DNA glycosylase (EC:3.2.2.-)
G:T/U mismatch-specific DNA glycosylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ32_9GAMM
G:T/U mismatch-specific DNA glycosylase {ECO:0000313|EMBL:EIL92473.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source=
scnpilot_expt_750_bf_scaffold_1652_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1766..2461)
DNA (696bp) protein (232aa)
Cytochrome c553 n=1 Tax=Rhodanobacter denitrificans RepID=M4NC23_9GAMM
cytochrome c553 Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
cytochrome C
scnpilot_expt_750_bf_scaffold_1652_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2557..4164
DNA (1608bp) protein (536aa)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NF09_9GAMM rbh
amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:AGG88163.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xant
scnpilot_expt_750_bf_scaffold_1652_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4177..5577)
DNA (1401bp) protein (467aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54) Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WKU0_9GAMM rbh
scnpilot_expt_750_bf_scaffold_1652_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5574..6077)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034DF1C2
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria;
disulfide bond formation protein DsbB
scnpilot_expt_750_bf_scaffold_1652_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6253..6636)
DNA (384bp) protein (128aa)
50S ribosomal protein L17 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKT8_9GAMM
LSU ribosomal protein L17P Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
LSU ribosomal protein L17P
scnpilot_expt_750_bf_scaffold_1652_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6841..7839)
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha n=2 Tax=Rhodanobacter RepID=I4WKT7_9GAMM rbh
scnpilot_expt_750_bf_scaffold_1652_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7856..8482)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM94_9GAMM rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobac
SSU ribosomal protein S4P
scnpilot_expt_750_bf_scaffold_1652_11
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8550..8936)
DNA (387bp) protein (129aa)
30S ribosomal protein S11 n=3 Tax=Rhodanobacter RepID=I4WKT5_9GAMM
SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter
scnpilot_expt_750_bf_scaffold_1652_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9027..9383)
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL48_9GAMM
30S ribosomal protein S13 Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
30S ribosomal protein S13
scnpilot_expt_750_bf_scaffold_1652_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9509..10663)
DNA (1155bp) protein (385aa)
Protein translocase subunit SecY n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL49_9GAMM rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadace
preprotein translocase, SecY subunit
Displaying 13 items

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