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scnpilot_expt_750_bf_scaffold_1949

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1949_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..400
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDW0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88919.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
scnpilot_expt_750_bf_scaffold_1949_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(416..2248)
DNA (1833bp) protein (611aa)
glycine dehydrogenase, decarboxylating (EC:1.4.4.2) Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
glycine dehydrogenase, decarboxylating (EC:1.4.4.2)
Glycine dehydrogenase (decarboxylating) n=1 Tax=Rhodanobacter denitrificans RepID=I4WY26_9GAMM
scnpilot_expt_750_bf_scaffold_1949_3
RBG_19FT_COMBO_Bacteroidetes_42_10_curated, Bacteroidia, Bacteroidetes, Bacteria

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2506..2910
DNA (405bp) protein (135aa)
Uncharacterized protein id=12550301 bin=BDI species=Pseudomonas aeruginosa genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein Tax=RBG_19FT_COMBO_Bacteroidetes_42_10_curated
scnpilot_expt_750_bf_scaffold_1949_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3516..3923
DNA (408bp) protein (136aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WY25_9GAMM
lactoylglutathione lyase-like lyase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EIL99355.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacte
scnpilot_expt_750_bf_scaffold_1949_trna_1
unknown

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comp(4053..4136)
DNA (84bp)
transferRNA
scnpilot_expt_750_bf_scaffold_1949_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4271..6955
DNA (2685bp) protein (895aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=666685 species="Bacteria; Proteobacteria; Gamm
RNAse R (EC:3.1.-.-)
Ribonuclease R n=1 Tax=Rhodanobacter denitrificans RepID=M4NGE8_9GAMM rbh
scnpilot_expt_750_bf_scaffold_1949_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6952..7698
DNA (747bp) protein (249aa)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB {ECO:0000256|HAMAP-Rule:MF_01887}; EC=2.1.1.185 {ECO:0000256|HAMAP-Rule:MF_01887};; 23S rRNA (guanosine2251 2'-O)-methyltransferase {ECO:0000256|HAMAP
23S rRNA Gm-2251 2'-O-methyltransferase (EC:2.1.1.-)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIR0_9GAMM rbh
scnpilot_expt_750_bf_scaffold_1949_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7695..7976
DNA (282bp) protein (94aa)
Permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8J5_9GAMM
membrane protein
Permease {ECO:0000313|EMBL:EIL95786.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_expt_750_bf_scaffold_1949_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8022..8711)
DNA (690bp) protein (230aa)
Ribonuclease T {ECO:0000256|HAMAP-Rule:MF_00157, ECO:0000256|SAAS:SAAS00051933}; EC=3.1.13.- {ECO:0000256|HAMAP-Rule:MF_00157, ECO:0000256|SAAS:SAAS00051955};; Exoribonuclease T {ECO:0000256|HAMAP-Rul
RNAse T (EC:3.1.13.-)
Ribonuclease T n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWQ7_9GAMM rbh
scnpilot_expt_750_bf_scaffold_1949_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8724..9230)
DNA (507bp) protein (169aa)
Peroxiredoxin oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6K8_9GAMM
peroxiredoxin Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
peroxiredoxin
scnpilot_expt_750_bf_scaffold_1949_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9363..10754
DNA (1392bp) protein (464aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6L0_9GAMM rbh
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:EIL95101.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae;
DnaJ-class molecular chaperone with C-terminal Zn finger domain
scnpilot_expt_750_bf_scaffold_1949_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10959..12785)
DNA (1827bp) protein (609aa)
GTP-binding protein TypA/BipA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VME4_9GAMM rbh
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:EIL88385.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanoba
GTP-binding protein TypA/BipA
scnpilot_expt_750_bf_scaffold_1949_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12998..14326)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW64_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91455.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
H+/gluconate symporter family protein
scnpilot_expt_750_bf_scaffold_1949_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14500..16728
DNA (2229bp) protein (743aa)
Outer membrane receptor protein n=1 Tax=Rhodanobacter denitrificans RepID=M4ND64_9GAMM rbh
Outer membrane receptor protein {ECO:0000313|EMBL:AGG88675.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.
outer membrane receptor protein
scnpilot_expt_750_bf_scaffold_1949_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16861..17883
DNA (1023bp) protein (341aa)
Poly (3-hydroxybutyrate) depolymerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVA4_9GAMM rbh
putative esterase
Putative esterase {ECO:0000313|EMBL:AGG88676.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rho
scnpilot_expt_750_bf_scaffold_1949_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18011..21517
DNA (3507bp) protein (1169aa)
Putative two component regulator sensor histidine kinase/response regulator fusion transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIW8_9GAMM rbh
Putative two component regulator sensor histidine kinase/response regulator fusion transcriptional regulator {ECO:0000313|EMBL:EIL99409.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteo
signal transduction histidine kinase
scnpilot_expt_750_bf_scaffold_1949_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21457..22809
DNA (1353bp) protein (451aa)
Cytochrome-c oxidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTF1_9GAMM rbh
Cytochrome-c oxidase {ECO:0000313|EMBL:EIL90492.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulv
Cbb3-type cytochrome oxidase subunit 1
Displaying 17 items

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