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scnpilot_expt_750_bf_scaffold_3029

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_3029_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..1112)
DNA (1110bp) protein (370aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:AGG90414.1}; EC=3.6.1.- {ECO:0000313|EMBL:AGG90414.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomo
ATP-dependent DNA helicase RecG n=1 Tax=Rhodanobacter denitrificans RepID=I4WVX4_9GAMM
scnpilot_expt_750_bf_scaffold_3029_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1194..1577)
DNA (384bp) protein (128aa)
Endoribonuclease L-PSP n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNH5_9GAMM
Endoribonuclease L-PSP {ECO:0000313|EMBL:EIM01017.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter th
endoribonuclease L-PSP
scnpilot_expt_750_bf_scaffold_3029_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1817..3985)
DNA (2169bp) protein (723aa)
RelA/SpoT family (P)ppGpp synthetase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVX6_9GAMM rbh
(P)ppGpp synthetase, RelA/SpoT family {ECO:0000313|EMBL:AGG90416.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rh
(p)ppGpp synthetase, RelA/SpoT family
scnpilot_expt_750_bf_scaffold_3029_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4107..4397)
DNA (291bp) protein (97aa)
DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-R
DNA-directed RNA polymerase subunit omega n=3 Tax=Rhodanobacter RepID=I4WVX7_9GAMM
scnpilot_expt_750_bf_scaffold_3029_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5013..5396
DNA (384bp) protein (128aa)
Surface lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRJ9_9GAMM
Surface lipoprotein {ECO:0000313|EMBL:EIL89840.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvu
surface lipoprotein
scnpilot_expt_750_bf_scaffold_3029_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5413..5712)
DNA (300bp) protein (100aa)
Putative NTP binding protein (Contains STAS domain) n=1 Tax=Rhodanobacter denitrificans RepID=I4WVX9_9GAMM
putative NTP binding protein (contains STAS domain)
Putative NTP binding protein (Contains STAS domain) {ECO:0000313|EMBL:AGG90419.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter
scnpilot_expt_750_bf_scaffold_3029_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5709..6392)
DNA (684bp) protein (228aa)
Organic solvent resistance ABC transporter auxiliary protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRK1_9GAMM rbh
Organic solvent resistance ABC transporter auxiliary protein {ECO:0000313|EMBL:EIL89842.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rho
ABC-type transport system involved in resistance to organic solvents, auxiliary component
scnpilot_expt_750_bf_scaffold_3029_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6453..6557)
DNA (105bp) protein (35aa)
ABC-type transport system involved in resistance to organic solvents, periplasmic component n=1 Tax=Rhodanobacter denitrificans RepID=I4WVY1_9GAMM
ABC-type transport system involved in resistance to organic solvents, periplasmic component
ABC-type transport system involved in resistance to organic solvents, periplasmic component {ECO:0000313|EMBL:AGG90421.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaprote
scnpilot_expt_750_bf_scaffold_3029_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6554..7273)
DNA (720bp) protein (240aa)
Organic solvent resistance ABC transporter periplasmic protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNI1_9GAMM rbh
Organic solvent resistance ABC transporter periplasmic protein {ECO:0000313|EMBL:EIM01023.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; R
ABC-type transport system involved in resistance to organic solvents, periplasmic component
scnpilot_expt_750_bf_scaffold_3029_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7308..8084)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNI2_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM01024.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
hypothetical protein
scnpilot_expt_750_bf_scaffold_3029_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8081..8455)
DNA (375bp) protein (125aa)
ABC-type transport system involved in resistance to organic solvents, ATPase component n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1C2_9GAMM
ABC-type transport system involved in resistance to organic solvents, ATPase component {ECO:0000313|EMBL:EIL93263.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonada
toluene ABC transporter ATP-binding protein
scnpilot_expt_750_bf_scaffold_3029_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8404..8853)
DNA (450bp) protein (150aa)
ABC-type transport system involved in resistance to organic solvents, ATPase component n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNI3_9GAMM
ABC-type transport system involved in resistance to organic solvents, ATPase component {ECO:0000313|EMBL:EIM01025.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonada
ABC-type transport system involved in resistance to organic solvents, ATPase component
scnpilot_expt_750_bf_scaffold_3029_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8928..9575)
DNA (648bp) protein (216aa)
guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_0
Guanylate kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVY4_9GAMM rbh
scnpilot_expt_750_bf_scaffold_3029_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9624..10172)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3N2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94073.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_expt_750_bf_scaffold_3029_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10169..10783)
DNA (615bp) protein (205aa)
Large protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU51_9GAMM
Large protein {ECO:0000313|EMBL:EIL90742.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphyll
A nuclease of the HNH/ENDO VII superwith conserved AHH family protein
scnpilot_expt_750_bf_scaffold_3029_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10846..11706)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2C0_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93611.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
TIGR00255 family protein
scnpilot_expt_750_bf_scaffold_3029_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11762..12466
DNA (705bp) protein (235aa)
RNAse PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS
Ribonuclease PH n=1 Tax=Rhodanobacter denitrificans RepID=M4NSB2_9GAMM rbh
scnpilot_expt_750_bf_scaffold_3029_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12468..13067
DNA (600bp) protein (200aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard p
Non-canonical purine NTP pyrophosphatase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNI8_9GAMM rbh
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
scnpilot_expt_750_bf_scaffold_3029_19
Eikenella corrodens, Eikenella, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12932..13885)
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DT53_EIKCO
Uncharacterized protein {ECO:0000313|EMBL:EEG24759.1}; TaxID=546274 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Eikenella.;" source="Eikenella corrodens ATCC 23
scnpilot_expt_750_bf_scaffold_3029_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14195..16528
DNA (2334bp) protein (778aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2C7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93618.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
Protein of unknown function (DUF1631)
scnpilot_expt_750_bf_scaffold_3029_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16525..16884
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2C8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93619.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
PilZ domain-containing protein
scnpilot_expt_750_bf_scaffold_3029_22
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16997..18313
DNA (1317bp) protein (439aa)
Xaa-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582}; Short=X-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279};; EC=3.4.13.9 {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000
Xaa-Pro dipeptidase (EC:3.4.13.9)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C2304 rbh
scnpilot_expt_750_bf_scaffold_3029_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18469..19479)
DNA (1011bp) protein (337aa)
Cytochrome bd ubiquinol oxidase, subunit II protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRL4_9GAMM rbh
Cytochrome bd ubiquinol oxidase, subunit II protein {ECO:0000313|EMBL:EIL89855.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacte
cytochrome bd ubiquinol oxidase, subunit II protein
scnpilot_expt_750_bf_scaffold_3029_24
unknown

Not on your lists

comp(19482..19574)
DNA (93bp) protein (31aa)

This feature has no annotations

Displaying 24 items

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