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scnpilot_expt_750_bf_scaffold_2828

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2828_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..4417)
DNA (4416bp) protein (1472aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003648E5D rbh
alpha-2-macroglobulin
Alpha-2-macroglobulin {ECO:0000313|EMBL:AHX12898.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_expt_750_bf_scaffold_2828_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4799..5329)
DNA (531bp) protein (177aa)
UDP-glucose pyrophosphorylase (EC:2.7.7.9)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; Flags: Precurs
UDP-glucose pyrophosphorylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXK1_9GAMM
scnpilot_expt_750_bf_scaffold_2828_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5284..5613)
DNA (330bp) protein (110aa)
UDP-glucose pyrophosphorylase (EC:2.7.7.9) Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
UDP-glucose pyrophosphorylase (EC:2.7.7.9)
UTP-glucose-1-phosphate uridylyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIA5_9GAMM
scnpilot_expt_750_bf_scaffold_2828_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5610..7508)
DNA (1899bp) protein (633aa)
Putative nucleoside-diphosphate sugar epimerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIA4_9GAMM rbh
putative nucleoside-diphosphate sugar epimerase Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
putative nucleoside-diphosphate sugar epimerase
scnpilot_expt_750_bf_scaffold_2828_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7495..8520)
DNA (1026bp) protein (342aa)
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXJ9_9GAMM rbh
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase {ECO:0000313|EMBL:AGG88934.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Ga
scnpilot_expt_750_bf_scaffold_2828_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8528..9700)
DNA (1173bp) protein (391aa)
Tetratricopeptide repeat protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIA2_9GAMM rbh
putative N-acetylglucosaminyl transferase Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
putative N-acetylglucosaminyl transferase
scnpilot_expt_750_bf_scaffold_2828_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9697..9945)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NML5_9GAMM
Protein of unknown function (DUF1049)
Uncharacterized protein {ECO:0000313|EMBL:AGG88936.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
scnpilot_expt_750_bf_scaffold_2828_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10067..10366)
DNA (300bp) protein (100aa)
Integration host factor subunit beta n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSL3_9GAMM
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1163408 species="Bacteria; Proteobacteri
integration host factor, beta subunit
scnpilot_expt_750_bf_scaffold_2828_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10439..11023)
DNA (585bp) protein (195aa)
30S ribosomal protein S1 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSL2_9GAMM
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacte
SSU ribosomal protein S1P
scnpilot_expt_750_bf_scaffold_2828_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12209..12889)
DNA (681bp) protein (227aa)
Cytidylate kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY2_9GAMM rbh
cytidylate kinase Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
cytidylate kinase
scnpilot_expt_750_bf_scaffold_2828_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12994..13251
DNA (258bp) protein (86aa)
Acyl-CoA-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6W2_9GAMM
acyl-CoA-binding protein
Acyl-CoA-binding protein {ECO:0000313|EMBL:EIL95203.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter
scnpilot_expt_750_bf_scaffold_2828_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13333..15531
DNA (2199bp) protein (733aa)
NADH:flavin oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6W1_9GAMM
NADH:flavin oxidoreductase {ECO:0000313|EMBL:EIL95202.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacte
NADH:flavin oxidoreductase
scnpilot_expt_750_bf_scaffold_2828_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15524..16435
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WXJ1_9GAMM rbh
transcriptional regulator Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
transcriptional regulator
scnpilot_expt_750_bf_scaffold_2828_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16837..17313)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI9_9GAMM
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=666685 species="Bacteria
scnpilot_expt_750_bf_scaffold_2828_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17310..20537)
DNA (3228bp) protein (1076aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria;
Carbamoyl-phosphate synthase large chain n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI8_9GAMM rbh
carbamoyl-phosphate synthase, large subunit
scnpilot_expt_750_bf_scaffold_2828_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20539..21303)
DNA (765bp) protein (255aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_012
Carbamoyl-phosphate synthase small chain n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI7_9GAMM
carbamoyl-phosphate synthase small subunit
Displaying 16 items

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