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scnpilot_expt_750_bf_scaffold_1543

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1543_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..779
DNA (777bp) protein (259aa)
Aldehyde dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWQ7_9GAMM
NAD-dependent aldehyde dehydrogenase
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:AGG89514.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanoba
scnpilot_expt_750_bf_scaffold_1543_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1119..1847
DNA (729bp) protein (243aa)
Putative short chain dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W467_9GAMM
Putative short chain dehydrogenase {ECO:0000313|EMBL:EIL94258.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhod
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
scnpilot_expt_750_bf_scaffold_1543_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1924..2970
DNA (1047bp) protein (349aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:00
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W465_9GAMM rbh
dihydroorotate dehydrogenase, subfamily 2
scnpilot_expt_750_bf_scaffold_1543_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2960..3859
DNA (900bp) protein (300aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-ace
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W464_9GAMM
scnpilot_expt_750_bf_scaffold_1543_5
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4244..4762
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KZR0_FRAAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFC84571.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="F
scnpilot_expt_750_bf_scaffold_1543_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4809..5687)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTA8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL90449.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter f
hypothetical protein
scnpilot_expt_750_bf_scaffold_1543_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5684..7039)
DNA (1356bp) protein (452aa)
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z3_9GAMM
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster {ECO:0000313|EMBL:EIL95234.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria;
helicase
scnpilot_expt_750_bf_scaffold_1543_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7061..8107)
DNA (1047bp) protein (349aa)
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z3_9GAMM
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster {ECO:0000313|EMBL:EIL95234.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria;
DEAD/DEAH box helicase
scnpilot_expt_750_bf_scaffold_1543_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8228..9223)
DNA (996bp) protein (332aa)
Transcriptional regulator CysB-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVD5_9GAMM rbh
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG88647.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter
scnpilot_expt_750_bf_scaffold_1543_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9494..10981
DNA (1488bp) protein (496aa)
precorrin-2 dehydrogenase (EC:1.3.1.76 2.1.1.107)
Siroheme synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVD4_9GAMM rbh
Siroheme synthase {ECO:0000256|HAMAP-Rule:MF_01646}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter deni
scnpilot_expt_750_bf_scaffold_1543_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11058..11996
DNA (939bp) protein (313aa)
cysteine synthase (EC:2.5.1.47)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae;
Cysteine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVD3_9GAMM
scnpilot_expt_750_bf_scaffold_1543_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12007..12660
DNA (654bp) protein (218aa)
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein id=12493358 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
scnpilot_expt_750_bf_scaffold_1543_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12830..13330
DNA (501bp) protein (167aa)
Isochorismatase hydrolase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTE4_9GAMM rbh
Isochorismatase hydrolase {ECO:0000313|EMBL:EIL90485.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter
nicotinamidase-like amidase
scnpilot_expt_750_bf_scaffold_1543_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13278..14279
DNA (1002bp) protein (334aa)
Transcription regulator n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTE3_9GAMM rbh
Transcription regulator {ECO:0000313|EMBL:EIL90484.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter f
transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain rbh
scnpilot_expt_750_bf_scaffold_1543_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14276..15844)
DNA (1569bp) protein (523aa)
Phospholipase D n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX19_9GAMM rbh
Phospholipase D {ECO:0000313|EMBL:EIL91760.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphy
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
scnpilot_expt_750_bf_scaffold_1543_16
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15962..16759)
DNA (798bp) protein (266aa)
Putative transporter, formate/nitrite transporter family n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HWS3_PSEUO
Membrane protein {ECO:0000313|EMBL:KJJ94829.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
formate/nitrite transporter family protein
scnpilot_expt_750_bf_scaffold_1543_17
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17043..17876)
DNA (834bp) protein (278aa)
Uncharacterized protein {ECO:0000313|EMBL:KJV35462.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojue
scnpilot_expt_750_bf_scaffold_1543_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18159..18461)
DNA (303bp) protein (101aa)
Putative plasmid maintenance system antidote protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRU3_9GAMM
Putative plasmid maintenance system antidote protein {ECO:0000313|EMBL:EIL89934.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobact
helix-hairpin-helix DNA-binding motif-containing protein
scnpilot_expt_750_bf_scaffold_1543_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18471..18749)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRU4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89935.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_expt_750_bf_scaffold_1543_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18928..20133)
DNA (1206bp) protein (402aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EIL90478.1}; EC=2.3.1.9 {ECO:0000313|EMBL:EIL90478.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomona
Acetyl-CoA acetyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTD7_9GAMM rbh
acetyl-CoA acetyltransferase
scnpilot_expt_750_bf_scaffold_1543_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20238..22670)
DNA (2433bp) protein (811aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX31_9GAMM rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EIL91772.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodano
scnpilot_expt_750_bf_scaffold_1543_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22735..23346)
DNA (612bp) protein (204aa)
TetR family transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI00034848EF rbh
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG88906.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter
scnpilot_expt_750_bf_scaffold_1543_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23583..24008
DNA (426bp) protein (142aa)
nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.
Nucleoside diphosphate kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXN0_9GAMM
scnpilot_expt_750_bf_scaffold_1543_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24147..25277
DNA (1131bp) protein (377aa)
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIC7_9GAMM rbh
scnpilot_expt_750_bf_scaffold_1543_25
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25267..26064
DNA (798bp) protein (266aa)
Type IV pilus biogenesis/stability protein PilW n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIC8_9GAMM
type IV pilus biogenesis/stability protein PilW Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
type IV pilus biogenesis/stability protein PilW
scnpilot_expt_750_bf_scaffold_1543_26
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26061..27068
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX36_9GAMM rbh
hypothetical protein Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1543_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27221..27871
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX37_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91778.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_expt_750_bf_scaffold_1543_28
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27868..28218
DNA (351bp) protein (117aa)
outer membrane assembly protein YfgL n=1 Tax=Dyella ginsengisoli RepID=UPI0003495CDF
membrane protein
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadacea
Displaying 28 items

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