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scnpilot_expt_750_bf_scaffold_3079

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_3079_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..732)
DNA (732bp) protein (244aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadal
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Rhodanobacter sp. 115 RepID=I4WEW2_9GAMM
scnpilot_expt_750_bf_scaffold_3079_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(729..1214)
DNA (486bp) protein (162aa)
ADP-ribose pyrophosphatase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WEW1_9GAMM
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EIL98002.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacte
ADP-ribose pyrophosphatase
scnpilot_expt_750_bf_scaffold_3079_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1329..1658
DNA (330bp) protein (110aa)
ATP-dependent Clp protease ClpS n=1 Tax=Dyella japonica RepID=UPI000371B393
clpS; Clp protease ClpS
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" so
scnpilot_expt_750_bf_scaffold_3079_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1753..3027
DNA (1275bp) protein (425aa)
ATP-dependent Clp protease subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WEV9_9GAMM
ATP-dependent Clp protease subunit {ECO:0000313|EMBL:EIL98000.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhod
clpA; Clp protease ClpX
scnpilot_expt_750_bf_scaffold_3079_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2976..3947
DNA (972bp) protein (324aa)
ATP-dependent Clp protease subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WEV9_9GAMM
ATP-dependent Clp protease subunit {ECO:0000313|EMBL:EIL98000.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhod
clpA; Clp protease ClpX
scnpilot_expt_750_bf_scaffold_3079_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4021..4239)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WEV8_9GAMM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="
translation initiation factor IF-1
scnpilot_expt_750_bf_scaffold_3079_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4394..4669)
DNA (276bp) protein (92aa)
Putative polyhydroxyalkanoic acid system protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY05_9GAMM
putative polyhydroxyalkanoic acid system protein
Putative polyhydroxyalkanoic acid system protein {ECO:0000313|EMBL:AGG88750.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;"
scnpilot_expt_750_bf_scaffold_3079_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4770..5573
DNA (804bp) protein (268aa)
FHA domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIP3_9GAMM
FHA domain-containing protein {ECO:0000313|EMBL:EIL99334.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanoba
FHA domain-containing protein
scnpilot_expt_750_bf_scaffold_3079_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5706..6791
DNA (1086bp) protein (362aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1162
phosphoserine aminotransferase apoenzyme (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VZ24_9GAMM rbh
scnpilot_expt_750_bf_scaffold_3079_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6901..7989
DNA (1089bp) protein (363aa)
Chorismate mutase, clade 2 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VZ23_9GAMM rbh
Chorismate mutase, clade 2 {ECO:0000313|EMBL:EIL92464.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacte
prephenate dehydratase
scnpilot_expt_750_bf_scaffold_3079_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8342..9271
DNA (930bp) protein (310aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VZ22_9GAMM
scnpilot_expt_750_bf_scaffold_3079_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9545..10318
DNA (774bp) protein (258aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-k
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VZ21_9GAMM rbh
3-deoxy-D-manno-octulosonate cytidylyltransferase
scnpilot_expt_750_bf_scaffold_3079_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10315..10785
DNA (471bp) protein (157aa)
Protein tyrosine phosphatase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNM0_9GAMM
Protein tyrosine phosphatase {ECO:0000313|EMBL:EIL88811.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobac
phosphotyrosine protein phosphatase
scnpilot_expt_750_bf_scaffold_3079_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10812..12011
DNA (1200bp) protein (400aa)
Excinuclease ABC subunit C (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4VZ19_9GAMM
UvrABC system protein C {ECO:0000256|SAAS:SAAS00088139}; Flags: Fragment;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sou
uvrC; excinuclease ABC subunit C
Displaying 14 items

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