ggKbase home page

scnpilot_expt_750_bf_scaffold_3826

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_3826_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..435)
DNA (435bp) protein (145aa)
RNA polymerase sigma factor n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNJ8_9GAMM
alternative sigma factor RpoH
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteri
scnpilot_expt_750_bf_scaffold_3826_2
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(513..2162)
DNA (1650bp) protein (550aa)
ABC transporter ATP-binding protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00036C8241
ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:CAP63491.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source
scnpilot_expt_750_bf_scaffold_3826_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2361..3044
DNA (684bp) protein (228aa)
PKHD-type hydroxylase UU5_02012 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadale
PKHD-type hydroxylase UU5_02012 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNJ7_9GAMM rbh
putative iron-regulated protein
scnpilot_expt_750_bf_scaffold_3826_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3045..3743)
DNA (699bp) protein (233aa)
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBas
Uracil-DNA glycosylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WX87_9GAMM rbh
scnpilot_expt_750_bf_scaffold_3826_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3740..4582)
DNA (843bp) protein (281aa)
Two-component system response regulator n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ34_9GAMM rbh
Two-component system response regulator {ECO:0000313|EMBL:EIL89325.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source=
response regulator containing a CheY-like receiver domain and a GGDEF domain
scnpilot_expt_750_bf_scaffold_3826_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4609..5529)
DNA (921bp) protein (307aa)
Cell division protein FtsX n=1 Tax=Rhodanobacter denitrificans RepID=I4WX89_9GAMM
cell division protein
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobact
scnpilot_expt_750_bf_scaffold_3826_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5526..6203)
DNA (678bp) protein (226aa)
Cell division ATP-binding protein FtsE n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ36_9GAMM rbh
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EIL89327.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="
cell division ATP-binding protein FtsE
scnpilot_expt_750_bf_scaffold_3826_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6320..6676)
DNA (357bp) protein (119aa)
ATP-dependent RNA helicase RhlB {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011806}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011808};; TaxID=666685 species="B
ATP-dependent RNA helicase RhlB n=2 Tax=Rhodanobacter denitrificans RepID=M4NKJ1_9GAMM
DNA/RNA helicase, superfamily II
Displaying 8 items

View Taxonomy