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scnpilot_expt_750_bf_scaffold_2224_5

Organism: SCNPILOT_EXPT_750_BF_Rhodanobacter_69_7_fragment

partial RP 6 / 55 BSCG 8 / 51 MC: 2 ASCG 4 / 38
Location: 2733..3386

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:EIM02695.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EIM02695.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomo similarity UNIPROT
DB: UniProtKB
  • Identity: 75.8
  • Coverage: 211.0
  • Bit_score: 332
  • Evalue 3.30e-88
RNA polymerase factor sigma-70 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WTA3_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 75.8
  • Coverage: 211.0
  • Bit_score: 332
  • Evalue 2.40e-88
  • rbh
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 81.5
  • Coverage: 195.0
  • Bit_score: 322
  • Evalue 6.90e-86

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Taxonomy

Rhodanobacter sp. 115 → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 654
TTGAGCACGGGTGTCGAACCGATGGAGCCCAGGCATGCAGCAGCCGACGATGCGGACGAGGCGGCCGTGAACGGCCTCGCCGGCGCACTCGATGCCGACCTGCTGGAAACGACCGCACGGGAGGCCCCGGCCACCTTCGACGGCTTCCTGGCACAGGTGGAGCGGCGCGCCTTCCGCGTGGCCGAACTCAACCTGCGCCACCGGGAAGACGCCATGGACGCGGTGCAGGACGCGATGCTGCGCCTGGTCAAGCACTACCGGGACAAGCCGGCCGCCGAGTGGGCGCCGCTGTTCTGGGGCATCCTGCGGCGGCGCATCGTCGACTTGCAGCGCCGCCGCAAGGTGCGCTCCATCGTGGTGGGCTGGCTGGGCGGCGGCCGCGACGACGATGGCGACGAGCTGCCCAGCTGGGACCCGGCCGACCACGGCCCGGGCCCGGAAGACCGCCTGCAGGATGCGCAGTCCTGGACCGATCTCAGCGCCGCACTGGGCAAATTGCCGCGGCGCCAGCGCGAGGCCTTCATGCTGCGCATGCTGGAGGGTCTGGACGTGGCAGAGACCGCAGAGGCCATGGGCTGCTCCGAGGGCAGCGTGAAAACGCATCTTTCGCGCGCCATGCAACGGCTGCGCGAGCAACTGGAGGACTGGCGATGA
PROTEIN sequence
Length: 218
LSTGVEPMEPRHAAADDADEAAVNGLAGALDADLLETTAREAPATFDGFLAQVERRAFRVAELNLRHREDAMDAVQDAMLRLVKHYRDKPAAEWAPLFWGILRRRIVDLQRRRKVRSIVVGWLGGGRDDDGDELPSWDPADHGPGPEDRLQDAQSWTDLSAALGKLPRRQREAFMLRMLEGLDVAETAEAMGCSEGSVKTHLSRAMQRLREQLEDWR*