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scnpilot_expt_750_bf_scaffold_1058

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1058_1
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1325)
DNA (1323bp) protein (441aa)
protease Do id=12552447 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
protease Do
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_expt_750_bf_scaffold_1058_2
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1384..2460)
DNA (1077bp) protein (359aa)
Sigma E regulatory protein, MucB/RseB n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3G9_VARPE
putative sigma E regulatory protein, MucB/RseB; K03598 sigma-E factor negative regulatory protein RseB Tax=GWA2_Curvibacter_64_110_curated
sigma e regulatory protein, mucb/rseb
scnpilot_expt_750_bf_scaffold_1058_3
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2478..3155)
DNA (678bp) protein (226aa)
Sigma-E factor negative regulatory protein-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5R6_RAMTT
anti sigma-E protein RseA Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
Sigma-E factor negative regulatory protein
scnpilot_expt_750_bf_scaffold_1058_4
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3152..3736)
DNA (585bp) protein (195aa)
RNA polymerase sigma factor n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5R7_RAMTT
rpoE; RNA polymerase sigma-24 factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tat
scnpilot_expt_750_bf_scaffold_1058_5
unknown

Not on your lists

comp(3821..4306)
DNA (486bp) protein (162aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1058_6
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4371..5615)
DNA (1245bp) protein (415aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Acidovorax sp. KKS102 RepID=K0I838_9BURK
3-oxoacyl-ACP synthase
scnpilot_expt_750_bf_scaffold_1058_7
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5772..6770)
DNA (999bp) protein (333aa)
Candidate 3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5S1_RAMTT
fabG; 3-oxoacyl-ACP reductase
Candidate 3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:AEG93955.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;"
scnpilot_expt_750_bf_scaffold_1058_8
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6799..7749)
DNA (951bp) protein (317aa)
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] id=12552454 bin=BDI species=Delftia acidovorans genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
malonyl CoA-acyl carrier protein transacylase
scnpilot_expt_750_bf_scaffold_1058_9
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7810..8790)
DNA (981bp) protein (327aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF
3-oxoacyl-ACP synthase (EC:2.3.1.180)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Acidovorax sp. CF316 RepID=J0UFC0_9BURK
scnpilot_expt_750_bf_scaffold_1058_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8832..9869)
DNA (1038bp) protein (346aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase
Phosphate acyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYL1_ALIDB
fatty acid/phospholipid synthesis protein PlsX
scnpilot_expt_750_bf_scaffold_1058_11
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10037..10219)
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=5 Tax=Acidovorax RepID=F0QCX4_ACIAP
50S ribosomal protein L32
rpmF; 50S ribosomal protein L32 Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_expt_750_bf_scaffold_1058_12
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10381..10932)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1U3_9BURK
hypothetical protein
hypothetical protein Tax=GWA2_Curvibacter_64_110_curated
scnpilot_expt_750_bf_scaffold_1058_13
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10959..11567
DNA (609bp) protein (203aa)
septum formation protein Maf n=1 Tax=Acidovorax radicis RepID=UPI0002376695
maf protein
Maf-like protein C380_07170 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp.
scnpilot_expt_750_bf_scaffold_1058_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11564..12352
DNA (789bp) protein (263aa)
uroporphyrin-III methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003672A60
uroporphyrin-III C/tetrapyrrole methyltransferase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
uroporphyrin-III C/tetrapyrrole methyltransferase
scnpilot_expt_750_bf_scaffold_1058_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12415..14679
DNA (2265bp) protein (755aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002EF46B1
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1058_16
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14684..15640)
DNA (957bp) protein (319aa)
peptidase S49; K04773 protease IV [EC:3.4.21.-] Tax=CG_Rhodof_03
Peptidase S49 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WAY4_ACISJ
peptidase S49
scnpilot_expt_750_bf_scaffold_1058_17
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15699..16076)
DNA (378bp) protein (126aa)
Rieske (2Fe-2S) domain-containing protein id=12549874 bin=BDI species=Limnohabitans sp. Rim28 genus=Limnohabitans taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Rieske (2Fe-2S) domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1058_18
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16117..16779)
DNA (663bp) protein (221aa)
HAD family hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
HAD-superfamily hydrolase subfamily IA, variant 3 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21XQ2_RHOFD rbh
HAD family hydrolase
scnpilot_expt_750_bf_scaffold_1058_19
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16776..17777)
DNA (1002bp) protein (334aa)
RluA family pseudouridine synthase (EC:4.2.1.70); K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] id=12549872 bin=BDI species=Acidovorax citrulli genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
RluA family pseudouridine synthase (EC:4.2.1.70)
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_expt_750_bf_scaffold_1058_20
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18375..19424
DNA (1050bp) protein (350aa)
ribonuclease E (EC:3.1.4.-)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=535289 species="Bacteria; Proteobacteria; Bet
Ribonuclease E n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MDR9_ACIET
Displaying 20 items

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