ggKbase home page

scnpilot_expt_750_bf_scaffold_1376

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1376_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..844
DNA (843bp) protein (281aa)
cation transporter n=1 Tax=Variovorax paradoxus RepID=UPI00035C6278
cbs domain containing protein
CBS domain containing protein {ECO:0000313|EMBL:ADU39575.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax parad
scnpilot_expt_750_bf_scaffold_1376_2
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

844..2223
DNA (1380bp) protein (460aa)
Apolipoprotein N-acyltransferase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XW61_RAMTT
lnt; apolipoprotein N-acyltransferase (ALP N-acyltransferase), membrane protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_expt_750_bf_scaffold_1376_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2166..2390
DNA (225bp) protein (75aa)
apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-] Tax=GWE1_Burkholderiales_65_30_curated
Apolipoprotein N-acyltransferase id=1269952 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
apolipoprotein N-acyltransferase
scnpilot_expt_750_bf_scaffold_1376_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2442..2954
DNA (513bp) protein (171aa)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|SAAS:SAAS00064166};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria;
3-hydroxydecanoyl-(acyl carrier protein) dehydratase (EC:4.2.1.60)
3-hydroxydecanoyl-ACP dehydratase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000371BBE9
scnpilot_expt_750_bf_scaffold_1376_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2951..4171
DNA (1221bp) protein (407aa)
Beta-ketoacyl synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXY9_ALIDB rbh
Beta-ketoacyl synthase {ECO:0000313|EMBL:GAO26309.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp.
beta-ketoacyl synthase
scnpilot_expt_750_bf_scaffold_1376_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4276..5196
DNA (921bp) protein (307aa)
glyQ; glycyl-tRNA ligase subunit alpha (EC:6.1.1.14) id=12549617 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
glyQ; glycyl-tRNA ligase subunit alpha (EC:6.1.1.14) Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
glyQ; Glycine--tRNA ligase subunit alpha
scnpilot_expt_750_bf_scaffold_1376_7
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5278..5565
DNA (288bp) protein (96aa)
MazE protein n=1 Tax=Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454) RepID=E5AL05_BURRH
MazE protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_expt_750_bf_scaffold_1376_8
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5578..6033
DNA (456bp) protein (152aa)
Ribonuclease VapC n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NW57_9DELT
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_expt_750_bf_scaffold_1376_9
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6048..8222
DNA (2175bp) protein (725aa)
glycine--tRNA ligase (EC:6.1.1.14); K01879 glycyl-tRNA synthetase beta chain [EC:6.1.1.14] id=5080404 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
glyS; glycyl-tRNA ligase subunit beta (EC:6.1.1.14)
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_expt_750_bf_scaffold_1376_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8219..8842
DNA (624bp) protein (208aa)
hypothetical protein id=12552835 bin=BDI species=Acidovorax sp. MR-S7 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1376_11
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8851..9429
DNA (579bp) protein (193aa)
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CM88_VARPS
histidinol-phosphate phosphatase family protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_expt_750_bf_scaffold_1376_12
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9487..10260
DNA (774bp) protein (258aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Polaromonas sp. CF318 RepID=J3CS29_9BURK
1-acyl-sn-glycerol-3-phosphate acyltransferase
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:BAO81679.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonada
scnpilot_expt_750_bf_scaffold_1376_13
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10282..11193
DNA (912bp) protein (304aa)
metal-dependent hydrolase n=1 Tax=Acidovorax radicis RepID=UPI000237630D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44333.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.
scnpilot_expt_750_bf_scaffold_1376_14
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11501..11743)
DNA (243bp) protein (81aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Comamonas testosteroni S44 RepID=D8D0Q0_COMTE
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KGG92664.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Ps
short-chain dehydrogenase/reductase sdr
scnpilot_expt_750_bf_scaffold_1376_15
unknown

Not on your lists

11974..12273
DNA (300bp) protein (100aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1376_16
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12391..13470)
DNA (1080bp) protein (360aa)
hypothetical protein Tax=GWA2_Curvibacter_64_110_curated
hypothetical protein id=5080400 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
scnpilot_expt_750_bf_scaffold_1376_17
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13565..14014
DNA (450bp) protein (150aa)
Transcriptional regulator, MerR family-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XW69_RAMTT
MerR family transcriptional regulator
Transcriptional regulator, MerR family-like protein {ECO:0000313|EMBL:AEG91639.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" s
scnpilot_expt_750_bf_scaffold_1376_18
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14055..14498
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J3D5B7_9BURK
hypothetical protein Tax=GWA2_Curvibacter_64_110_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1376_19
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14524..15705
DNA (1182bp) protein (394aa)
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:EIK91684.1}; EC=1.3.8.4 {ECO:0000313|EMBL:EIK91684.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadace
isovaleryl-CoA dehydrogenase n=1 Tax=Brachymonas chironomi RepID=UPI0003732EC5 rbh
acyl-CoA dehydrogenase domain-containing protein
scnpilot_expt_750_bf_scaffold_1376_20
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15773..16447
DNA (675bp) protein (225aa)
carbonate dehydratase (EC:4.2.1.1); K01673 carbonic anhydrase [EC:4.2.1.1] Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
carbonate dehydratase (EC:4.2.1.1)
Carbonic anhydrase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VJF0_POLNA rbh
scnpilot_expt_750_bf_scaffold_1376_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16452..18350
DNA (1899bp) protein (633aa)
(isocitrate dehydrogenase (nadp(+))) kinase (EC:2.7.11.5)
Isocitrate dehydrogenase kinase/phosphatase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TST8_ALIDB
Isocitrate dehydrogenase kinase/phosphatase {ECO:0000256|HAMAP-Rule:MF_00747, ECO:0000256|SAAS:SAAS00063056}; Short=IDH kinase/phosphatase {ECO:0000256|HAMAP-Rule:MF_00747};; Short=IDHK/P {ECO:0000256
scnpilot_expt_750_bf_scaffold_1376_22
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18399..19580
DNA (1182bp) protein (394aa)
acetyl-CoA acetyltransferase n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI00030C774D
acetyl-CoA acetyltransferase
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AFU47824.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KK
scnpilot_expt_750_bf_scaffold_1376_23
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19655..20293
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003661299
Pyridoxamine 5'-phosphate oxidase-like protein {ECO:0000313|EMBL:EIK91688.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" sou
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
scnpilot_expt_750_bf_scaffold_1376_24
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20301..20975
DNA (675bp) protein (225aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q124G4_POLSJ
short chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABE46078.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polar
scnpilot_expt_750_bf_scaffold_1376_25
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21004..21570)
DNA (567bp) protein (189aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:CCH80269.1}; EC=2.1.1.77 {ECO:0000313|EMBL:CCH80269.1};; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae
protein-L-isoaspartate(D-aspartate)O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate(D-aspartate) n=1 Tax=Nocardioides sp. CF8 RepID=R7XSX2_9ACTO
scnpilot_expt_750_bf_scaffold_1376_26
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21617..21886)
DNA (270bp) protein (90aa)
Translation initiation factor IF-1 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUV6_9BURK
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hyd
translation initiation factor if-1
scnpilot_expt_750_bf_scaffold_1376_27
unknown

Not on your lists

22346..22657
DNA (312bp) protein (104aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1376_28
unknown

Not on your lists

comp(22794..23276)
DNA (483bp) protein (161aa)

This feature has no annotations

Displaying 28 items

View Taxonomy