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scnpilot_expt_750_bf_scaffold_1833

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1833_1
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..450
DNA (450bp) protein (150aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Com
Isocitrate dehydrogenase [NADP] n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W884_ACISJ
icd; isocitrate dehydrogenase
scnpilot_expt_750_bf_scaffold_1833_2
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(530..802)
DNA (273bp) protein (91aa)
Candidate cold shock-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZB0_RAMTT
cspD; cold shock
Candidate cold shock-like protein {ECO:0000313|EMBL:AEG93280.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter
scnpilot_expt_750_bf_scaffold_1833_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1368..1973
DNA (606bp) protein (202aa)
ATP-dependent Clp protease ATP-binding protein ClpA {ECO:0000313|EMBL:EIK92461.1}; EC=3.6.1.15 {ECO:0000313|EMBL:EIK92461.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkh
ATP-dependent Clp protease ATP-binding protein ClpA n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTC1_9BURK
ATP-dependent Clp protease ATP-binding subunit ClpA
scnpilot_expt_750_bf_scaffold_1833_4
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2060..3718
DNA (1659bp) protein (553aa)
ATP-dependent Clp protease, ATP-binding subunit clpA n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T197_ACIDE
ATP-dependent Clp protease, ATP-binding subunit clpA {ECO:0000313|EMBL:EER61744.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" s
ATP-dependent Clp protease ATP-binding protein ClpA
scnpilot_expt_750_bf_scaffold_1833_5
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3780..4736)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Eudoraea adriatica RepID=UPI00037126C6
Uncharacterized protein {ECO:0000313|EMBL:GAO44708.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
NAD dependent epimerase/dehydratase family protein
scnpilot_expt_750_bf_scaffold_1833_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4825..6276
DNA (1452bp) protein (484aa)
exodeoxyribonuclease I (EC:3.1.11.1)
Exodeoxyribonuclease I n=2 Tax=Alicycliphilus denitrificans RepID=E8TZY7_ALIDB
ExodeoxyribonucleaseIprotein {ECO:0000313|EMBL:GAO23518.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphil
scnpilot_expt_750_bf_scaffold_1833_7
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6338..6904)
DNA (567bp) protein (189aa)
Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen n=1 Tax=Thauera phenylacetica B4P RepID=N6ZSS2_9RHOO
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_expt_750_bf_scaffold_1833_8
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7011..8375
DNA (1365bp) protein (455aa)
tryptophan synthase subunit beta (EC:4.2.1.20); K06001 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Tryptophan synthase beta chain n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YU1_RHOFD rbh
predicted alternative tryptophan synthase beta-subunit
scnpilot_expt_750_bf_scaffold_1833_9
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8475..9272)
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XWM1_LEPCP rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB35022.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodni
scnpilot_expt_750_bf_scaffold_1833_10
unknown

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comp(9227..9457)
DNA (231bp) protein (77aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1833_11
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9545..10285)
DNA (741bp) protein (247aa)
phosphoserine phosphatase (EC:3.1.3.3); K01079 phosphoserine phosphatase [EC:3.1.3.3] Tax=GWA2_Curvibacter_64_110_curated
phosphoserine phosphatase n=1 Tax=Variovorax paradoxus RepID=UPI00036414FF
serB; putative phosphoserine phosphatase SerB
scnpilot_expt_750_bf_scaffold_1833_12
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10351..10980)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI00023754F7
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1833_13
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10995..14477)
DNA (3483bp) protein (1161aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=232721 species="Bacteria; Pr
Transcription-repair-coupling factor n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WAK7_ACISJ
transcription-repair coupling factor
scnpilot_expt_750_bf_scaffold_1833_14
unknown

Not on your lists

comp(15117..15404)
DNA (288bp) protein (96aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1833_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15455..16930
DNA (1476bp) protein (492aa)
Putative carbon monoxide dehydrogenase, large chain n=1 Tax=Variovorax paradoxus B4 RepID=T1XAR6_VARPD
putative carbon monoxide dehydrogenase, large chain
Putative carbon monoxide dehydrogenase, large chain {ECO:0000313|EMBL:AGU49618.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" s
scnpilot_expt_750_bf_scaffold_1833_16
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17046..17747
DNA (702bp) protein (234aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase id=1266330 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_expt_750_bf_scaffold_1833_17
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17744..18253
DNA (510bp) protein (170aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Acidovorax avenae RepID=UPI0003170F39
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {E
scnpilot_expt_750_bf_scaffold_1833_18
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18328..19836)
DNA (1509bp) protein (503aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Aci
Histidine kinase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6E3_ACIDE
ATP-binding domain-containing protein
scnpilot_expt_750_bf_scaffold_1833_19
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19842..20573)
DNA (732bp) protein (244aa)
Two component transcriptional regulator, winged helix family n=2 Tax=Variovorax RepID=E6UV13_VARPE
winged helix family two component transcriptional regulator
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_expt_750_bf_scaffold_1833_20
unknown

Not on your lists

20738..21001
DNA (264bp) protein (88aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1833_21
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21073..21816
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6E1_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59942.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
hypothetical protein
scnpilot_expt_750_bf_scaffold_1833_22
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21985..22911
DNA (927bp) protein (309aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Polaromonas sp. CF318 RepID=J2U4K2_9BURK rbh
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJL86027.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Pol
hypothetical protein
scnpilot_expt_750_bf_scaffold_1833_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22908..25124
DNA (2217bp) protein (739aa)
GTP pyrophosphokinase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI000369A206
(P)ppGpp synthetase I SpoT/RelA {ECO:0000313|EMBL:GAD24860.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp
(p)ppGpp synthetase I SpoT/RelA
scnpilot_expt_750_bf_scaffold_1833_trna_1
unknown

Not on your lists

25166..25239
DNA (74bp)
transferRNA
scnpilot_expt_750_bf_scaffold_1833_24
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25588..26568
DNA (981bp) protein (327aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00054821};; tRNA(Ile)-2-lysyl-cytidine
tRNA(Ile)-lysidine synthetase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036B2E9C
tRNA(ile)-lysidine synthetase
scnpilot_expt_750_bf_scaffold_1833_25
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26630..27904
DNA (1275bp) protein (425aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovo
aspartate kinase n=1 Tax=Acidovorax avenae RepID=UPI0003134270
aspartate kinase
scnpilot_expt_750_bf_scaffold_1833_trna_2
unknown

Not on your lists

27931..28020
DNA (90bp)
transferRNA
Displaying 27 items

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