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scnpilot_expt_750_bf_scaffold_1839

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1839_1
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..403
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003609C93
IPTL-CTERM sorting domain protein {ECO:0000313|EMBL:KFJ09712.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovor
hypothetical protein
scnpilot_expt_750_bf_scaffold_1839_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(763..1614)
DNA (852bp) protein (284aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000364C73F
Uncharacterized protein {ECO:0000313|EMBL:GAD22372.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
scnpilot_expt_750_bf_scaffold_1839_3
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1630..2415)
DNA (786bp) protein (262aa)
UDP-2,3-diacylglucosamine hydrolase {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063966}; EC=3.6.1.54 {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063978};; UDP-2,3-diacylgluco
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003642C98
UDP-2,3-diacylglucosamine hydrolase
scnpilot_expt_750_bf_scaffold_1839_4
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2436..2945)
DNA (510bp) protein (170aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; C
peptidyl-prolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3E2_ACIDE
scnpilot_expt_750_bf_scaffold_1839_5
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2979..3659)
DNA (681bp) protein (227aa)
Peptidyl-prolyl cis-trans isomerase, cyclophilin type n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q129L0_POLSJ
cyclophilin type peptidyl-prolyl cis-trans isomerase
Peptidyl-prolyl cis-trans isomerase, cyclophilin type {ECO:0000313|EMBL:ABE44782.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadac
scnpilot_expt_750_bf_scaffold_1839_6
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3747..4259)
DNA (513bp) protein (171aa)
Candidate TPR domain protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4X4_RAMTT
TPR domain-containing protein
Candidate TPR domain protein {ECO:0000313|EMBL:AEG92630.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tata
scnpilot_expt_750_bf_scaffold_1839_7
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4549..5925
DNA (1377bp) protein (459aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
Cysteine--tRNA ligase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4X5_RAMTT rbh
cysS; cysteinyl-tRNA synthetase
scnpilot_expt_750_bf_scaffold_1839_8
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5971..6621
DNA (651bp) protein (217aa)
Candidate DNA glycosylase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4X6_RAMTT
alkA; DNA glycosylase
Candidate DNA glycosylase {ECO:0000313|EMBL:AEG92632.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataoui
scnpilot_expt_750_bf_scaffold_1839_9
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6674..7645
DNA (972bp) protein (324aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=2 Tax=Alicycliphilus denitrificans RepID=E8TZX7_ALIDB
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=
acetyl-CoA carboxylase, carboxyl transferase subunit alpha
scnpilot_expt_750_bf_scaffold_1839_10
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7756..8049)
DNA (294bp) protein (98aa)
Voltage-gated potassium channel protein SHAB n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0IVP3_COMT2
Voltage-gated potassium channel protein SHAB
Voltage-gated potassium channel protein SHAB {ECO:0000313|EMBL:KGH15191.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comam
scnpilot_expt_750_bf_scaffold_1839_11
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8213..8530
DNA (318bp) protein (106aa)
Polyhydroxyalkanoate synthesis repressor PhaR n=1 Tax=Acidovorax sp. CF316 RepID=J0U1W8_9BURK
hypothetical protein
Polyhydroxyalkanoate synthesis repressor PhaR {ECO:0000313|EMBL:EJE50147.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ac
scnpilot_expt_750_bf_scaffold_1839_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8554..8697
DNA (144bp) protein (48aa)
Polyhydroxyalkonate synthesis repressor, PhaR n=2 Tax=Variovorax paradoxus RepID=C5CKR1_VARPS
polyhydroxyalkonate synthesis repressor, phar
Polyhydroxyalkonate synthesis repressor, PhaR {ECO:0000313|EMBL:ADU37520.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
scnpilot_expt_750_bf_scaffold_1839_13
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8735..10153
DNA (1419bp) protein (473aa)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Polaromonas sp. CF318 RepID=J2L178_9BURK
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
rimO; ribosomal protein S12 methylthiotransferase
scnpilot_expt_750_bf_scaffold_1839_trna_1
unknown

Not on your lists

comp(10277..10358)
DNA (82bp)
transferRNA
scnpilot_expt_750_bf_scaffold_1839_14
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10434..10931
DNA (498bp) protein (166aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=365046 species="Bacteria; Proteobacteria; Beta
Ribonuclease R n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVR5_RAMTT
rnr; exoribonuclease R
Displaying 15 items

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