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scnpilot_expt_750_bf_scaffold_288_curated

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_288_curated_1
Bacteroides coprosuis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11..1024)
DNA (1014bp) protein (338aa)
quinol oxidase n=1 Tax=Bacteroides propionicifaciens RepID=UPI0003778DF2
TQO small subunit DoxD domain-containing protein {ECO:0000313|EMBL:EGJ71461.1}; TaxID=679937 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprosuis DSM 18011.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_288_curated_2
unknown

Not on your lists

1072..1203
DNA (132bp) protein (44aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_288_curated_3
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1686..3173
DNA (1488bp) protein (496aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Joostella marina DSM 19592 RepID=I3C9Y2_9FLAO
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:EIJ40425.1}; Flags: Precursor;; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
beta-lactamase
scnpilot_expt_750_bf_scaffold_288_curated_4
Paenisporosarcina sp. HGH0030, Paenisporosarcina, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3430..3882
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Paenisporosarcina sp. HGH0030 RepID=S2XVV6_9BACL
glyoxalase/bleomycin resistance protein/dioxygenase
Uncharacterized protein {ECO:0000313|EMBL:EPD54125.1}; TaxID=1078085 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Paenisporosarcina.;" source="Paenisporosarcina sp. HGH0030.;"
scnpilot_expt_750_bf_scaffold_288_curated_5
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3891..4610
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S6P2_PEDSD
hypothetical protein; K09166 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY51118.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_expt_750_bf_scaffold_288_curated_6
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4668..5033)
DNA (366bp) protein (122aa)
MerR family transcriptional regulator n=1 Tax=Pedobacter agri RepID=UPI00029B36FB
Uncharacterized protein {ECO:0000313|EMBL:EKB04211.1}; TaxID=883155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides [odoratimimus] CIP 103059.;"
MerR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_288_curated_7
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5159..6040
DNA (882bp) protein (294aa)
alpha/beta hydrolase n=1 Tax=Pedobacter agri RepID=UPI00029A2887
Uncharacterized protein {ECO:0000313|EMBL:EKB04210.1}; TaxID=883155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides [odoratimimus] CIP 103059.;"
alpha/beta hydrolase
scnpilot_expt_750_bf_scaffold_288_curated_8
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6241..6735
DNA (495bp) protein (165aa)
GCN5-related N-acetyltransferase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUP8_DYAFD
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACT93035.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_expt_750_bf_scaffold_288_curated_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(6805..7890)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF92_NIAKG
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_expt_750_bf_scaffold_288_curated_10
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8067..11120
DNA (3054bp) protein (1018aa)
Protein-export membrane protein SecD n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PI98_CHIPD
bifunctional preprotein translocase subunit SecD/SecF; K12257 SecD/SecF fusion protein
Protein-export membrane protein SecD {ECO:0000313|EMBL:ACU63660.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_expt_750_bf_scaffold_288_curated_11
unknown

Not on your lists

comp(11195..11308)
DNA (114bp) protein (38aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_288_curated_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(11355..12779)
DNA (1425bp) protein (475aa)
pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40]
pyruvate kinase n=1 Tax=Segetibacter koreensis RepID=UPI00037398B3
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_expt_750_bf_scaffold_288_curated_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(12797..13726)
DNA (930bp) protein (310aa)
sugar kinase n=1 Tax=Segetibacter koreensis RepID=UPI000361A34E
PfkB domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_expt_750_bf_scaffold_288_curated_14
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13750..14736)
DNA (987bp) protein (329aa)
PfkB domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7D2_NIAKG
Carbohydrate kinase {ECO:0000313|EMBL:KIC90315.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
PfkB domain-containing protein
scnpilot_expt_750_bf_scaffold_288_curated_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14787..15929)
DNA (1143bp) protein (381aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7W9_NIAKG
integral membrane sensor signal transduction histidine kinase
scnpilot_expt_750_bf_scaffold_288_curated_16
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16103..17560
DNA (1458bp) protein (486aa)
arginine deiminase; K01478 arginine deiminase [EC:3.5.3.6]
Arginine deiminase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGE0_NIAKG
Amidinotransferase {ECO:0000313|EMBL:KIC91693.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_expt_750_bf_scaffold_288_curated_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

17598..18506
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGD9_NIAKG
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_expt_750_bf_scaffold_288_curated_18
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18525..20183
DNA (1659bp) protein (553aa)
DNA repair protein RecN n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ56_CHIPD
DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N)
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_expt_750_bf_scaffold_288_curated_19
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20198..20671
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SEJ9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EZH72350.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_288_curated_20
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20805..21266)
DNA (462bp) protein (154aa)
Two-component response regulator n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GM21_9SPHI
Hydrogenase transcriptional regulatory protein hupR1 {ECO:0000313|EMBL:KHJ38678.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
response regulator receiver protein
scnpilot_expt_750_bf_scaffold_288_curated_21
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21399..23543)
DNA (2145bp) protein (715aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00036CB238
multi-sensor signal transduction multi-kinase
scnpilot_expt_750_bf_scaffold_288_curated_22
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23601..24365)
DNA (765bp) protein (255aa)
Methyltransferase domain protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VTG4_9SPHI
Methyltransferase domain protein {ECO:0000313|EMBL:EFK57065.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_288_curated_23
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24393..25157)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G3F6_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI90161.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_288_curated_24
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25499..26626)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00035F7D5D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95321.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_expt_750_bf_scaffold_288_curated_25
Cytophaga hutchinsonii, Cytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26853..28541)
DNA (1689bp) protein (563aa)
Rhs family-like protein (EC:3.2.1.-); K01238 [EC:3.2.1.-]
CHU large protein possible Rhs family-related protein and SAP-related protein {ECO:0000313|EMBL:ABG58796.1}; EC=3.2.1.- {ECO:0000313|EMBL:ABG58796.1};; TaxID=269798 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Cytophaga.;" source="Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469).;"
CHU large protein; possible Rhs family-related protein and SAP-related protein n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11UX0_CYTH3
scnpilot_expt_750_bf_scaffold_288_curated_26
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

28992..29384
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Indibacter alkaliphilus LW1 RepID=S2D4E8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EOZ91935.1}; TaxID=1189612 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" source="Indibacter alkaliphilus LW1.;"
XRE family transcriptional regulator
scnpilot_expt_750_bf_scaffold_288_curated_27
unknown

Not on your lists

comp(29691..30389)
DNA (699bp) protein (233aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_288_curated_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30501..31580)
DNA (1080bp) protein (360aa)
hypothetical protein; K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQI3_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:AEW03230.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_bf_scaffold_288_curated_29
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31932..33164
DNA (1233bp) protein (411aa)
Por secretion system C-terminal sorting domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CPB7_9FLAO
Tax=GWF2_Bacteroidetes_35_48_curated
scnpilot_expt_750_bf_scaffold_288_curated_30
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

33397..33930
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CGK8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:BAP30192.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
Displaying items 1-30 of 83 in total

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