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scnpilot_expt_750_p_scaffold_1057

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1057_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..478
DNA (477bp) protein (159aa)
protein disaggregation chaperone n=1 Tax=Thiobacillus denitrificans RepID=UPI000362BC24
ClpB protein
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus
scnpilot_expt_750_p_scaffold_1057_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

903..2615
DNA (1713bp) protein (571aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363E572 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96786.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" sou
scnpilot_expt_750_p_scaffold_1057_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2612..6394
DNA (3783bp) protein (1261aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003655574 rbh
signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:AAZ96787.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillu
scnpilot_expt_750_p_scaffold_1057_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6494..7237
DNA (744bp) protein (248aa)
surE; stationary phase survival protein SurE (EC:3.1.3.5 3.1.3.6 3.6.1.11)
5'-nucleotidase SurE {ECO:0000255|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000255|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000255|HAMAP-Rule:MF_00060}; TaxID=292415 spec
stationary phase survival protein SurE n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D7A48 rbh
scnpilot_expt_750_p_scaffold_1057_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7222..7902
DNA (681bp) protein (227aa)
protein-L-isoaspartate(D-aspartate) O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000255|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000255|HAMAP-Rule:M
protein-L-isoaspartate O-methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A837A rbh
scnpilot_expt_750_p_scaffold_1057_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7908..8825
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003813482 rbh
peptidoglycan-binding protein LysM
Peptidoglycan-binding protein LysM {ECO:0000313|EMBL:AAZ96790.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobaci
scnpilot_expt_750_p_scaffold_1057_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8822..9763
DNA (942bp) protein (314aa)
RNA polymerase sigma factor RpoS n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E4213 rbh
RNA polymerase sigma factor RpoS
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=292415 species="Bacteria; Proteobacteri
scnpilot_expt_750_p_scaffold_1057_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9810..10463
DNA (654bp) protein (218aa)
haloacid dehalogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C63D0 rbh
HAD family hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
HAD family hydrolase
scnpilot_expt_750_p_scaffold_1057_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10497..10877)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036FFB48
hypothetical protein; K09008 hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_p_scaffold_1057_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11014..12258
DNA (1245bp) protein (415aa)
aminotransferase (EC:2.6.1.-)
aminotransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DDDB7 rbh
Probable aspartate transaminase {ECO:0000313|EMBL:AAZ96795.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thioba
scnpilot_expt_750_p_scaffold_1057_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12282..13595
DNA (1314bp) protein (438aa)
homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] id=12495366 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenop
scnpilot_expt_750_p_scaffold_1057_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13609..15033
DNA (1425bp) protein (475aa)
threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
threonine synthase (EC:4.2.3.1)
threonine synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037434E9 rbh
scnpilot_expt_750_p_scaffold_1057_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14996..15652
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000360ACCC rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_p_scaffold_1057_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15687..16295
DNA (609bp) protein (203aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
glutathione S-transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000382BE96 rbh
glutathione S-transferase
scnpilot_expt_750_p_scaffold_1057_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16344..16877
DNA (534bp) protein (178aa)
methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] Tax=GWE1_Thiobacillus_62_9_curated
methionine sulfoxide reductase A (EC:1.8.4.11)
methionine sulfoxide reductase A n=1 Tax=Thiobacillus thioparus RepID=UPI00035C317D
scnpilot_expt_750_p_scaffold_1057_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16960..17784
DNA (825bp) protein (275aa)
hypothetical protein id=12493416 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98685.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_p_scaffold_1057_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17963..18163
DNA (201bp) protein (67aa)
methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] Tax=GWE1_Thiobacillus_62_9_curated
methionine sulfoxide reductase A (EC:1.8.4.11)
methionine sulfoxide reductase A n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F6089
scnpilot_expt_750_p_scaffold_1057_18
Pseudomonas taiwanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18253..18492
DNA (240bp) protein (80aa)
Uncharacterized protein n=6 Tax=Proteobacteria RepID=R9VFX0_PSEPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESW36936.1}; TaxID=1388762 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas taiwa
scnpilot_expt_750_p_scaffold_1057_19
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18492..18908
DNA (417bp) protein (139aa)
Twitching motility protein PilT n=4 Tax=Pseudomonas RepID=R9VB74_PSEPU
twitching motility protein PilT
PilT domain-containing protein {ECO:0000313|EMBL:ENY79252.1}; TaxID=1227924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomona
scnpilot_expt_750_p_scaffold_1057_20
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18937..19362
DNA (426bp) protein (142aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Neisseria lactamica RepID=UPI0002F439EE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIU28364.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
scnpilot_expt_750_p_scaffold_1057_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19455..21185)
DNA (1731bp) protein (577aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:
glutaminyl-tRNA synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI000365052D rbh
scnpilot_expt_750_p_scaffold_1057_22
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21408..22265
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000380296D rbh
hypothetical protein Tax=GWA2_Gallionellales_60_142_curated
hypothetical protein
scnpilot_expt_750_p_scaffold_1057_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22374..23450)
DNA (1077bp) protein (359aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] id=12495380 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=GWE1_Thiobacillus_62_9_curated
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
scnpilot_expt_750_p_scaffold_1057_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23447..23896)
DNA (450bp) protein (150aa)
NUDIX hydrolase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003721DA6
putative hydrolase Tax=GWE1_Thiobacillus_62_9_curated
hydrolase
scnpilot_expt_750_p_scaffold_1057_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23889..24431)
DNA (543bp) protein (181aa)
ribosomal large subunit pseudouridine synthase E (EC:5.4.99.-); K06181 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] Tax=GWE1_Thiobacillus_62_9_curated
ribosomal large subunit pseudouridine synthase E (EC:5.4.99.-)
ribosomal large subunit pseudouridine synthase E n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E3238 rbh
scnpilot_expt_750_p_scaffold_1057_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24503..25744
DNA (1242bp) protein (414aa)
isocitrate dehydrogenase (NADP) (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=GWE1_Thiobacillus_62_9_curated
isocitrate dehydrogenase (NADP) (EC:1.1.1.42)
isocitrate dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003740B5C rbh
scnpilot_expt_750_p_scaffold_1057_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25815..26021)
DNA (207bp) protein (69aa)
cold-shock protein n=1 Tax=Thiobacillus RepID=UPI000363017B
cold-shock DNA-binding protein family protein
Possible Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:AAZ96808.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;"
scnpilot_expt_750_p_scaffold_1057_28
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26295..26591
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003798ACC
Phosphate starvation-inducible protein PsiF {ECO:0000313|EMBL:BAQ78511.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" sourc
hypothetical protein
scnpilot_expt_750_p_scaffold_1057_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26646..27800
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E5BF1 rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_p_scaffold_1057_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27843..28403
DNA (561bp) protein (187aa)
Elongation factor P id=1324809 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
elongation factor P; K02356 elongation factor P Tax=GWE1_Thiobacillus_62_9_curated
elongation factor P
Displaying items 1-30 of 31 in total

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