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scnpilot_expt_750_p_scaffold_1405

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1405_1

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comp(199..1233)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YFS4_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD31243.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
arsenic resistance protein ArsB
scnpilot_expt_750_p_scaffold_1405_2
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1271..1573)
DNA (303bp) protein (101aa)
Ferredoxin n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U3W2_ETHHY
ferredoxin
Ferredoxin {ECO:0000313|EMBL:ADU26529.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485
scnpilot_expt_750_p_scaffold_1405_3
RBG_13_Bacteroidetes_46_8_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(1575..2600)
DNA (1026bp) protein (342aa)
putative corrinoidprotein Tax=RBG_13_Bacteroidetes_46_8_curated
Putative uncharacterized protein id=2995539 bin=GWF2_Bacteroidetes_35_48 species=Ethanoligenens harbinense genus=Ethanoligenens taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81 rbh
CO dehydrogenase/acetyl-CoA synthase subunit gamma-like protein
scnpilot_expt_750_p_scaffold_1405_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2607..3032)
DNA (426bp) protein (142aa)
protein-tyrosine phosphatase, low molecular weight (EC:1.20.4.1)
Protein-tyrosine phosphatase, low molecular weight {ECO:0000313|EMBL:ADQ79945.1}; EC=1.20.4.1 {ECO:0000313|EMBL:ADQ79945.1};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroi
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5F1_PALPW
scnpilot_expt_750_p_scaffold_1405_5
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(3081..3410)
DNA (330bp) protein (110aa)
UPF0060 membrane protein JoomaDRAFT_2378 n=1 Tax=Joostella marina DSM 19592 RepID=I3C6X0_9FLAO
membrane protein ynfA; K09771 hypothetical protein Tax=GWB2_Bacteroidetes_41_8_curated
membrane protein ynfA
scnpilot_expt_750_p_scaffold_1405_6
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(3416..3847)
DNA (432bp) protein (144aa)
Arsenate reductase {ECO:0000313|EMBL:EIA07374.1}; EC=1.20.4.1 {ECO:0000313|EMBL:EIA07374.1};; TaxID=1086011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavo
Arsenate reductase n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FVW3_9FLAO
protein tyrosine phosphatase
scnpilot_expt_750_p_scaffold_1405_7
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3867..4193)
DNA (327bp) protein (109aa)
Regulatory protein ArsR n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5F0_PALPW
regulatory protein arsr
Regulatory protein ArsR {ECO:0000313|EMBL:ADQ79944.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludib
scnpilot_expt_750_p_scaffold_1405_8
unknown

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comp(4268..4432)
DNA (165bp) protein (55aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1405_9
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4568..6283)
DNA (1716bp) protein (572aa)
arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1) (EC:3.6.3.16)
Arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1) n=2 Tax=Bacteroides RepID=D6D3B8_9BACE rbh
Arsenical pump-driving ATPase {ECO:0000313|EMBL:AAO75223.1}; TaxID=226186 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomic
scnpilot_expt_750_p_scaffold_1405_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6464..6790)
DNA (327bp) protein (109aa)
Sulfated surface glycoprotein 185 n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6AFL3_9PORP
Sulfated surface glycoprotein 185 {ECO:0000313|EMBL:EKN14533.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroid
arsenical resistance operon trans-acting repressor
scnpilot_expt_750_p_scaffold_1405_11
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(6886..7566)
DNA (681bp) protein (227aa)
ABC-type antimicrobial peptide transport system, ATPase component Tax=GWA2_Bacteroidetes_31_9_curated
ABC transporter related protein id=4391229 bin=GWF2_Bacteroidetes_38_335 species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
ABC transporter ATP-binding protein
scnpilot_expt_750_p_scaffold_1405_12
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

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comp(7570..8787)
DNA (1218bp) protein (406aa)
Membrane protein containing DUF214 id=2223214 bin=GWB2_Ignavibacteria_35_12 species=Rhodopirellula sallentina genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good rbh
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
hypothetical protein
scnpilot_expt_750_p_scaffold_1405_13
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(8804..9625)
DNA (822bp) protein (274aa)
Conserved domain protein id=4391227 bin=GWF2_Bacteroidetes_38_335 species=Bacteroides clarus genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
Conserved domain protein Tax=GWF2_Bacteroidetes_38_335_curated
scnpilot_expt_750_p_scaffold_1405_14
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(9658..10035)
DNA (378bp) protein (126aa)
regulatory protein arsr Tax=CG_Paludi_01
Regulatory protein ArsR id=4121557 bin=GWF2_Bacteroidetes_41_31 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
regulatory protein arsr
scnpilot_expt_750_p_scaffold_1405_15
GWF2_Bacteroidetes_40_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(10137..10634)
DNA (498bp) protein (166aa)
Putative uncharacterized protein id=4211766 bin=GWF2_Bacteroidetes_40_14 species=Odoribacter splanchnicus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
hypothetical protein Tax=GWF2_Bacteroidetes_40_14_curated
hypothetical protein
scnpilot_expt_750_p_scaffold_1405_16
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(10609..10983)
DNA (375bp) protein (125aa)
DGC domain protein id=1745019 bin=GWB2_Bacteroidetes_32_14 species=unknown genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47
hypothetical protein Tax=GWD2_Bacteroidetes_33_33_curated
hypothetical protein
scnpilot_expt_750_p_scaffold_1405_17
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11003..11518)
DNA (516bp) protein (172aa)
DGC domain containing protein n=1 Tax=Desulfovibrio africanus PCS RepID=M5PTP8_DESAF
DGC domain containing protein {ECO:0000313|EMBL:EMG37454.1}; TaxID=1262666 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Des
hypothetical protein
scnpilot_expt_750_p_scaffold_1405_18
RBG_16_Chloroflexi_54_11_curated, Chloroflexi, Bacteria

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comp(11605..12183)
DNA (579bp) protein (193aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Desulfovibrio africanus PCS RepID=M5PTU6_DESAF
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Chloroflexi_54_11_curated
RNA polymerase sigma factor
scnpilot_expt_750_p_scaffold_1405_19
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12213..13232)
DNA (1020bp) protein (340aa)
Permease n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5E5_PALPW rbh
permease rbh
Permease {ECO:0000313|EMBL:ADQ79939.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionic
scnpilot_expt_750_p_scaffold_1405_20
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(13300..13530)
DNA (231bp) protein (77aa)
BFD domain protein (2Fe-2S)-binding domain protein id=2618816 bin=GWA2_Bacteroidetes_42_15 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
BFD (2Fe-2S)-binding domain-containing protein Tax=GWE2_Bacteroidetes_42_39_curated
BFD (2Fe-2S)-binding domain-containing protein
scnpilot_expt_750_p_scaffold_1405_21
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13573..14271)
DNA (699bp) protein (233aa)
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5E4_PALPW rbh
cytochrome c biogenesis protein transmembrane region rbh
Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:ADQ79938.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Pa
scnpilot_expt_750_p_scaffold_1405_22
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14287..14712)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5E3_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79937.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludib
scnpilot_expt_750_p_scaffold_1405_23
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14709..14957)
DNA (249bp) protein (83aa)
Redox-active disulfide protein 2 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5E2_PALPW
redox-active disulfide protein 2
Redox-active disulfide protein 2 {ECO:0000313|EMBL:ADQ79936.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter prop
scnpilot_expt_750_p_scaffold_1405_24
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15028..15360)
DNA (333bp) protein (111aa)
Regulatory protein ArsR n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5E1_PALPW
regulatory protein arsr
Regulatory protein ArsR {ECO:0000313|EMBL:ADQ79935.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigen
scnpilot_expt_750_p_scaffold_1405_25
Bacteroides fragilis CAG:558, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(15914..20896)
DNA (4983bp) protein (1661aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI0002F2C23B rbh
Uncharacterized protein {ECO:0000313|EMBL:CCZ38226.1}; TaxID=1263047 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bactero
putative DNA methylase
Displaying 25 items

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