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SCNPILOT_EXPT_750_P_Bacteroidia_45_5.3_partial

SCNPILOT_EXPT_750_P_Bacteroidales_45_6
In projects: SCNPILOT_EXPT_750_P  |  SCN_92

Consensus taxonomy: Bacteroidales  →  Bacteroidia  →  Bacteroidetes  →  Bacteria

Description

highly fragmented

Displaying items 251-300 of 907 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_p_scaffold_13966
Species: Parabacteroides goldsteinii (50%)
2 2571 bp 45.66 6.03 95.33
scnpilot_expt_750_p_scaffold_19659
Species: Parabacteroides sp. CAG:409 (50%)
2 2043 bp 49.09 6.61 95.30
scnpilot_expt_750_p_scaffold_14369
Species: Paludibacter propionicigenes (100%)
2 2520 bp 49.56 4.66 95.24
scnpilot_expt_750_p_scaffold_23303
Species: Parabacteroides sp. HGS0025 (60%)
5 1834 bp 50.44 4.23 95.20
scnpilot_expt_750_p_scaffold_3011
Genus: Bacteroides (57.14%)
7 9458 bp 48.45 5.37 95.19
scnpilot_expt_750_p_scaffold_16036
Species: CG_Arma_01 (50%)
2 2345 bp 35.69 4.58 95.18
scnpilot_expt_750_p_scaffold_5242
Genus: Bacteroides (50%)
6 5664 bp 45.64 6.00 95.18
scnpilot_expt_750_p_scaffold_2968
Phylum: Bacteroidetes (100%)
7 9652 bp 46.85 6.24 95.08
scnpilot_expt_750_p_scaffold_27511
Species: Dysgonomonas gadei (100%)
2 1654 bp 46.67 4.69 95.04
scnpilot_expt_750_p_scaffold_43776
Species: Bacteroides dorei (50%)
2 1250 bp 42.24 3.20 95.04
scnpilot_expt_750_p_scaffold_4374 3 6673 bp 43.65 7.16 95.04
scnpilot_expt_750_p_scaffold_3491
Species: Dysgonomonas gadei (100%)
5 8262 bp 36.82 6.48 95.03
scnpilot_expt_750_p_scaffold_7796
Species: Paludibacter propionicigenes (66.67%)
3 3998 bp 48.82 5.38 95.00
scnpilot_expt_750_p_scaffold_8685
Order: Bacteroidales (66.67%)
6 5737 bp 47.80 6.36 94.96
scnpilot_expt_750_p_scaffold_47278
Species: Bacteroides fragilis (50%)
2 1195 bp 38.66 4.18 94.90
scnpilot_expt_750_p_scaffold_14749
Species: Dysgonomonas gadei (50%)
4 2476 bp 49.19 5.65 94.87
scnpilot_expt_750_p_scaffold_8241
Order: Bacteroidales (80%)
5 3820 bp 46.94 6.54 94.79
scnpilot_expt_750_p_scaffold_10522
Species: Paludibacter propionicigenes (100%)
3 3147 bp 49.22 5.48 94.76
scnpilot_expt_750_p_scaffold_13324
Species: Parabacteroides goldsteinii (100%)
2 2655 bp 41.47 5.18 94.69
scnpilot_expt_750_p_scaffold_17245
Order: Bacteroidales (66.67%)
3 2228 bp 47.17 5.16 94.66
scnpilot_expt_750_p_scaffold_2640
Genus: Dysgonomonas (57.14%)
7 10874 bp 48.31 5.49 94.66
scnpilot_expt_750_p_scaffold_8620
Species: Dysgonomonas mossii (50%)
4 3680 bp 45.00 3.67 94.65
scnpilot_expt_750_p_scaffold_5011
Species: Dysgonomonas mossii (80%)
5 5915 bp 44.89 6.80 94.64
scnpilot_expt_750_p_scaffold_31914
Species: Geofilum rubicundum (100%)
1 1509 bp 47.38 5.80 94.63
scnpilot_expt_750_p_scaffold_38591
Species: Dysgonomonas mossii (50%)
2 1348 bp 46.81 7.05 94.58
scnpilot_expt_750_p_scaffold_11638
Species: Parabacteroides goldsteinii (50%)
2 2933 bp 43.57 6.22 94.51
scnpilot_expt_750_p_scaffold_5126
Species: Flavobacterium sp. EM1321 (50%)
4 5780 bp 49.03 5.93 94.46
scnpilot_expt_750_p_scaffold_13724
Order: Bacteroidales (100%)
4 2601 bp 46.33 3.84 94.46
scnpilot_expt_750_p_scaffold_7397
Species: Bacteroides reticulotermitis (50%)
8 4178 bp 48.04 7.42 94.42
scnpilot_expt_750_p_scaffold_3425
Order: Bacteroidales (100%)
7 8408 bp 48.88 5.44 94.41
scnpilot_expt_750_p_scaffold_5507
Genus: Dysgonomonas (76.92%)
13 5399 bp 44.71 5.83 94.41
scnpilot_expt_750_p_scaffold_7255
Species: Dysgonomonas gadei (50%)
2 4252 bp 48.64 5.70 94.40
scnpilot_expt_750_p_scaffold_12492
Species: Dysgonomonas mossii (66.67%)
3 2787 bp 48.62 5.56 94.40
scnpilot_expt_750_p_scaffold_6330
Species: Dysgonomonas gadei (50%)
6 4752 bp 45.37 5.37 94.38
scnpilot_expt_750_p_scaffold_5601
Species: Paludibacter propionicigenes (50%)
4 5302 bp 48.17 6.22 94.38
scnpilot_expt_750_p_scaffold_8458
Order: Bacteroidales (66.67%)
3 3735 bp 41.77 4.89 94.38
scnpilot_expt_750_p_scaffold_3255
Order: Bacteroidales (50%)
10 8787 bp 45.59 4.89 94.37
scnpilot_expt_750_p_scaffold_9141
Order: Bacteroidales (80%)
5 3512 bp 45.73 6.83 94.31
scnpilot_expt_750_p_scaffold_3197
Order: Bacteroidales (90%)
10 8940 bp 46.04 5.76 94.30
scnpilot_expt_750_p_scaffold_6679
Species: Dysgonomonas gadei (50%)
2 4540 bp 47.05 4.57 94.30
scnpilot_expt_750_p_scaffold_4721
Genus: Dysgonomonas (60%)
10 8961 bp 48.14 5.52 94.28
scnpilot_expt_750_p_scaffold_17561
Species: Parabacteroides sp. CAG:409 (100%)
1 2199 bp 51.25 5.91 94.27
scnpilot_expt_750_p_scaffold_9519
Species: Dysgonomonas mossii (60%)
5 3402 bp 46.62 5.36 94.27
scnpilot_expt_750_p_scaffold_15740
Species: Geofilum rubicundum (50%)
2 2372 bp 47.60 5.27 94.22
scnpilot_expt_750_p_scaffold_3732
Phylum: Bacteroidetes (100%)
5 7753 bp 45.40 5.29 94.22
scnpilot_expt_750_p_scaffold_4188
Species: Dysgonomonas gadei (62.5%)
8 6949 bp 45.85 6.15 94.20
scnpilot_expt_750_p_scaffold_3147
Species: Dysgonomonas mossii (50%)
6 9058 bp 49.22 5.22 94.19
scnpilot_expt_750_p_scaffold_6535
Order: Bacteroidales (71.43%)
7 4625 bp 48.45 4.70 94.18
scnpilot_expt_750_p_scaffold_10488
Species: Dysgonomonas mossii (100%)
1 3154 bp 40.55 3.33 94.17
scnpilot_expt_750_p_scaffold_7119
Species: Dysgonomonas mossii (50%)
4 4319 bp 47.00 5.90 94.12
Displaying items 251-300 of 907 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.