ggKbase home page

SCNPILOT_EXPT_750_P_Bacteroidia_45_5.3_partial

SCNPILOT_EXPT_750_P_Bacteroidales_45_6
In projects: SCNPILOT_EXPT_750_P  |  SCN_92

Consensus taxonomy: Bacteroidales  →  Bacteroidia  →  Bacteroidetes  →  Bacteria

Description

highly fragmented

Displaying items 301-350 of 907 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_p_scaffold_6530
Species: Dysgonomonas gadei (50%)
4 4629 bp 48.28 5.18 94.10
scnpilot_expt_750_p_scaffold_9840
Genus: Dysgonomonas (66.67%)
3 3313 bp 47.75 5.28 94.08
scnpilot_expt_750_p_scaffold_12938
Species: Dysgonomonas mossii (75%)
4 2717 bp 46.23 6.44 94.07
scnpilot_expt_750_p_scaffold_14984
Species: Dysgonomonas mossii (100%)
2 2451 bp 54.47 6.63 94.00
scnpilot_expt_750_p_scaffold_8535
Species: Dysgonomonas gadei (66.67%)
3 3709 bp 48.48 5.66 93.99
scnpilot_expt_750_p_scaffold_6382
Species: Dysgonomonas mossii (50%)
4 4717 bp 34.49 6.04 93.94
scnpilot_expt_750_p_scaffold_9044
Species: Dysgonomonas mossii (50%)
4 3539 bp 46.65 5.23 93.92
scnpilot_expt_750_p_scaffold_3588
Species: Paludibacter propionicigenes (100%)
4 8047 bp 48.79 5.69 93.91
scnpilot_expt_750_p_scaffold_48150
Species: Paludibacter propionicigenes (100%)
2 1182 bp 50.76 5.29 93.91
scnpilot_expt_750_p_scaffold_1679
Species: Mucilaginibacter paludis (50%)
8 17515 bp 46.20 5.78 93.90
scnpilot_expt_750_p_scaffold_11692
Species: Paludibacter propionicigenes (66.67%)
3 2924 bp 48.73 4.62 93.88
scnpilot_expt_750_p_scaffold_7996
Species: Bacteroides sp. CAG:754 (50%)
4 3912 bp 47.80 6.39 93.87
scnpilot_expt_750_p_scaffold_12598
Genus: Dysgonomonas (50%)
4 2768 bp 46.64 4.88 93.86
scnpilot_expt_750_p_scaffold_3241
Species: Dysgonomonas gadei (50%)
4 8823 bp 48.31 5.89 93.85
scnpilot_expt_750_p_scaffold_5280
Genus: Dysgonomonas (71.43%)
7 5621 bp 41.34 6.14 93.83
scnpilot_expt_750_p_scaffold_5355
Species: Dysgonomonas gadei (60%)
5 5539 bp 46.40 5.64 93.75
scnpilot_expt_750_p_scaffold_11050
Species: Dysgonomonas gadei (100%)
2 3044 bp 47.27 4.85 93.73
scnpilot_expt_750_p_scaffold_18346
Species: Dysgonomonas mossii (66.67%)
3 2135 bp 48.43 6.67 93.72
scnpilot_expt_750_p_scaffold_40342
Species: Parabacteroides gordonii (50%)
2 1313 bp 41.36 3.81 93.68
scnpilot_expt_750_p_scaffold_2226
Genus: Dysgonomonas (50%)
16 13027 bp 47.33 5.97 93.66
scnpilot_expt_750_p_scaffold_39929
Species: GWE2_Bacteroidetes_42_39_curated (100%)
1 1321 bp 46.03 5.30 93.57
scnpilot_expt_750_p_scaffold_20064
Species: Barnesiella intestinihominis (50%)
2 2018 bp 39.59 3.84 93.51
scnpilot_expt_750_p_scaffold_4041
Species: Dysgonomonas mossii (50%)
8 7197 bp 46.74 5.91 93.46
scnpilot_expt_750_p_scaffold_63151
Species: Bacteroides thetaiotaomicron (50%)
2 1005 bp 37.41 2.99 93.43
scnpilot_expt_750_p_scaffold_3214
Genus: Bacteroides (75%)
4 8907 bp 47.30 6.88 93.43
scnpilot_expt_750_p_scaffold_4038
Genus: Flavobacterium (50%)
6 7201 bp 47.12 5.14 93.40
scnpilot_expt_750_p_scaffold_24346
Species: Bacteroides sp. CAG:530 (100%)
1 1786 bp 42.39 5.88 93.39
scnpilot_expt_750_p_scaffold_2841
Genus: Dysgonomonas (58.33%)
12 10140 bp 47.39 4.59 93.37
scnpilot_expt_750_p_scaffold_24868
Species: Dysgonomonas gadei (100%)
2 1761 bp 47.47 4.26 93.36
scnpilot_expt_750_p_scaffold_10599
Species: Bacteroides salyersiae (50%)
2 3128 bp 41.50 5.91 93.32
scnpilot_expt_750_p_scaffold_12298
Species: Bacteroides reticulotermitis (66.67%)
3 2823 bp 44.74 4.34 93.31
scnpilot_expt_750_p_scaffold_4054
Order: Bacteroidales (83.33%)
6 7168 bp 47.87 5.16 93.29
scnpilot_expt_750_p_scaffold_28582
Species: R_RIF_OD1_03_48_11 (50%)
2 1615 bp 34.74 2.32 93.25
scnpilot_expt_750_p_scaffold_7511
Species: Dysgonomonas mossii (50%)
4 4129 bp 47.03 6.30 93.22
scnpilot_expt_750_p_scaffold_52973
Species: Dysgonomonas mossii (50%)
2 1117 bp 47.36 3.58 93.20
scnpilot_expt_750_p_scaffold_44027
Order: Bacteroidales (66.67%)
3 1246 bp 33.31 2.01 93.18
scnpilot_expt_750_p_scaffold_36603
Species: Bacteroides nordii (50%)
2 1391 bp 47.23 6.47 93.17
scnpilot_expt_750_p_scaffold_15104
Genus: Bacteroides (66.67%)
3 2438 bp 42.17 5.95 93.15
scnpilot_expt_750_p_scaffold_9324
Species: Bacteroides ovatus (50%)
2 3459 bp 42.67 6.58 93.15
scnpilot_expt_750_p_scaffold_4499
Order: Bacteroidales (80%)
5 6493 bp 42.18 6.20 93.15
scnpilot_expt_750_p_scaffold_37257
Species: Pedobacter glucosidilyticus (50%)
2 1376 bp 36.41 3.27 93.10
scnpilot_expt_750_p_scaffold_19881
Species: Bacteroides sp. 3_1_19 (50%)
2 2028 bp 30.77 5.67 93.05
scnpilot_expt_750_p_scaffold_4473
Order: Bacteroidales (80%)
5 6521 bp 48.66 5.90 92.98
scnpilot_expt_750_p_scaffold_19018
Species: Dysgonomonas mossii (66.67%)
3 2088 bp 50.77 3.71 92.96
scnpilot_expt_750_p_scaffold_22016
Species: Parabacteroides distasonis (50%)
2 1901 bp 38.35 4.21 92.95
scnpilot_expt_750_p_scaffold_8510
Species: Dysgonomonas gadei (66.67%)
3 3715 bp 49.18 5.72 92.95
scnpilot_expt_750_p_scaffold_1821
Species: Dysgonomonas gadei (50%)
10 16046 bp 46.88 6.06 92.94
scnpilot_expt_750_p_scaffold_2798
Genus: Dysgonomonas (62.5%)
8 10295 bp 47.43 5.95 92.93
scnpilot_expt_750_p_scaffold_9760
Order: Bacteroidales (100%)
7 3339 bp 41.15 5.69 92.90
scnpilot_expt_750_p_scaffold_3720
Phylum: Bacteroidetes (80%)
5 7774 bp 44.98 5.50 92.89
Displaying items 301-350 of 907 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.