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SCNPILOT_EXPT_750_P_Bacteroidia_45_5.3_partial

SCNPILOT_EXPT_750_P_Bacteroidales_45_6
In projects: SCNPILOT_EXPT_750_P  |  SCN_92

Consensus taxonomy: Bacteroidales  →  Bacteroidia  →  Bacteroidetes  →  Bacteria

Description

highly fragmented

Displaying items 351-400 of 907 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_p_scaffold_35664
Species: Parabacteroides goldsteinii (50%)
2 1412 bp 38.81 3.19 92.85
scnpilot_expt_750_p_scaffold_3402
Class: Bacteroidia (80%)
5 8478 bp 42.92 6.07 92.82
scnpilot_expt_750_p_scaffold_3959
Species: Dysgonomonas gadei (60%)
5 7341 bp 48.30 4.84 92.81
scnpilot_expt_750_p_scaffold_15867
Species: Dysgonomonas gadei (50%)
4 2360 bp 46.53 6.78 92.80
scnpilot_expt_750_p_scaffold_7558
Order: Bacteroidales (100%)
3 4106 bp 49.39 5.60 92.79
scnpilot_expt_750_p_scaffold_22397
Species: Dysgonomonas gadei (100%)
3 1882 bp 49.63 5.05 92.77
scnpilot_expt_750_p_scaffold_2933
Order: Bacteroidales (85.71%)
7 9777 bp 44.20 6.16 92.76
scnpilot_expt_750_p_scaffold_4740
Order: Bacteroidales (57.14%)
7 6191 bp 29.45 5.49 92.70
scnpilot_expt_750_p_scaffold_6980
Species: Bacteroides sp. D2 (75%)
4 4387 bp 43.54 5.24 92.59
scnpilot_expt_750_p_scaffold_47892
Species: Bacteroides fragilis (100%)
1 1186 bp 46.63 8.64 92.58
scnpilot_expt_750_p_scaffold_3753
Genus: Dysgonomonas (50%)
10 7711 bp 47.79 6.35 92.56
scnpilot_expt_750_p_scaffold_4974
Order: Bacteroidales (85.71%)
7 5961 bp 47.86 5.79 92.55
scnpilot_expt_750_p_scaffold_4751
Species: Dysgonomonas mossii (50%)
8 6182 bp 46.59 5.70 92.54
scnpilot_expt_750_p_scaffold_21146
Species: Dysgonomonas gadei (100%)
1 1952 bp 48.00 6.02 92.52
scnpilot_expt_750_p_scaffold_4501
Genus: Paludibacter (55.56%)
9 6492 bp 48.15 5.62 92.51
scnpilot_expt_750_p_scaffold_3502
Order: Bacteroidales (62.5%)
8 8238 bp 45.50 5.46 92.50
scnpilot_expt_750_p_scaffold_10604
Genus: Bacteroides (66.67%)
3 3127 bp 45.47 5.04 92.48
scnpilot_expt_750_p_scaffold_10358
Species: Dysgonomonas gadei (75%)
4 3183 bp 44.67 6.91 92.46
scnpilot_expt_750_p_scaffold_1956
Order: Bacteroidales (71.43%)
14 14899 bp 46.69 5.65 92.44
scnpilot_expt_750_p_scaffold_40743
Species: Bacteroides fragilis (66.67%)
3 1305 bp 46.67 7.47 92.41
scnpilot_expt_750_p_scaffold_3832
Genus: Dysgonomonas (50%)
6 7571 bp 48.06 6.04 92.41
scnpilot_expt_750_p_scaffold_5676
Species: Dysgonomonas gadei (50%)
4 5245 bp 47.05 6.15 92.32
scnpilot_expt_750_p_scaffold_5395
Genus: Dysgonomonas (50%)
4 5499 bp 49.92 6.59 92.31
scnpilot_expt_750_p_scaffold_45919
Species: Dysgonomonas gadei (50%)
2 1216 bp 45.07 6.17 92.27
scnpilot_expt_750_p_scaffold_19289
Species: Prevotella sp. CAG:1058 (50%)
2 2068 bp 34.86 4.96 92.26
scnpilot_expt_750_p_scaffold_33980
Species: Dysgonomonas gadei (50%)
2 1454 bp 45.32 6.19 92.23
scnpilot_expt_750_p_scaffold_11238
Species: Dysgonomonas mossii (66.67%)
6 3009 bp 40.05 5.98 92.22
scnpilot_expt_750_p_scaffold_18031
Order: Bacteroidales (66.67%)
3 2158 bp 46.01 6.95 92.17
scnpilot_expt_750_p_scaffold_2253
Genus: Dysgonomonas (63.64%)
11 12870 bp 44.86 5.56 92.14
scnpilot_expt_750_p_scaffold_41200
Species: Dysgonomonas gadei (100%)
1 1296 bp 46.99 4.24 92.13
scnpilot_expt_750_p_scaffold_35226
Species: Paludibacter propionicigenes (50%)
2 1423 bp 50.25 6.68 92.13
scnpilot_expt_750_p_scaffold_7690
Species: Dysgonomonas gadei (80%)
5 4038 bp 47.50 5.63 92.12
scnpilot_expt_750_p_scaffold_5092
Species: Dysgonomonas mossii (80%)
5 5811 bp 42.26 5.89 92.10
scnpilot_expt_750_p_scaffold_5498
Species: GWE2_Bacteroidetes_40_63_curated (50%)
2 5408 bp 45.32 6.47 92.09
scnpilot_expt_750_p_scaffold_6059
Genus: Bacteroides (50%)
4 4948 bp 49.78 5.20 92.04
scnpilot_expt_750_p_scaffold_16685
Genus: Dysgonomonas (66.67%)
3 2282 bp 47.63 6.03 92.02
scnpilot_expt_750_p_scaffold_22335
Order: Bacteroidales (75%)
4 1885 bp 43.71 8.22 91.99
scnpilot_expt_750_p_scaffold_11756
Genus: Dysgonomonas (66.67%)
3 2914 bp 49.42 6.09 91.94
scnpilot_expt_750_p_scaffold_4466
Species: Parabacteroides goldsteinii (60%)
5 6534 bp 43.17 5.82 91.92
scnpilot_expt_750_p_scaffold_6652
Order: Bacteroidales (75%)
4 4557 bp 46.92 6.03 91.90
scnpilot_expt_750_p_scaffold_6313
Genus: Dysgonomonas (60%)
5 4763 bp 44.80 5.56 91.90
scnpilot_expt_750_p_scaffold_2695
Species: Dysgonomonas mossii (70%)
10 10657 bp 47.65 5.79 91.88
scnpilot_expt_750_p_scaffold_24901
Species: Dysgonomonas gadei (100%)
3 1760 bp 47.33 4.26 91.88
scnpilot_expt_750_p_scaffold_2418
Species: Dysgonomonas gadei (50%)
12 11864 bp 48.62 5.84 91.87
scnpilot_expt_750_p_scaffold_5952
Genus: Dysgonomonas (60%)
5 5027 bp 48.42 4.77 91.84
scnpilot_expt_750_p_scaffold_44084
Species: Dysgonomonas mossii (50%)
2 1245 bp 44.98 3.61 91.81
scnpilot_expt_750_p_scaffold_32346
Species: Dysgonomonas gadei (100%)
2 1497 bp 40.01 4.68 91.78
scnpilot_expt_750_p_scaffold_6780
Species: Dysgonomonas gadei (100%)
4 4488 bp 45.92 5.74 91.78
scnpilot_expt_750_p_scaffold_1961
Order: Bacteroidales (81.82%)
11 14872 bp 43.05 6.34 91.74
scnpilot_expt_750_p_scaffold_5433
Order: Bacteroidales (57.14%)
7 5469 bp 47.12 6.31 91.72
Displaying items 351-400 of 907 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.