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scnpilot_expt_750_p_scaffold_1525

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1525_1
Orientia chuto, Orientia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(319..591)
DNA (273bp) protein (91aa)
50S ribosomal protein L27 n=1 Tax=Orientia tsutsugamushi (strain Ikeda) RepID=RL27_ORITI
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1359168 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Orientia.;" source="Orie
rpmA; 50S ribosomal protein L27
scnpilot_expt_750_p_scaffold_1525_2
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(603..935)
DNA (333bp) protein (111aa)
50S ribosomal protein L21 n=1 Tax=Rickettsiaceae bacterium Os18 RepID=UPI00035E13B6
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; S
rplU; 50S ribosomal protein L21
scnpilot_expt_750_p_scaffold_1525_3
Bartonella rochalimae, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1015..2370)
DNA (1356bp) protein (452aa)
glmU; bifunctional: N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal) (EC:2.7.7.23 2.3.1.157)
Bifunctional protein GlmU n=1 Tax=Bartonella rochalimae ATCC BAA-1498 RepID=E6YLJ3_9RHIZ
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=685782 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella
scnpilot_expt_750_p_scaffold_1525_4
Rickettsiales bacterium Ac37b, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2402..3610
DNA (1209bp) protein (403aa)
DNA recombination protein RmuC homolog n=9 Tax=Rickettsia prowazekii RepID=RMUC_RICPR
rmuC; DNA recombination protein rmuC
DNA recombination protein rmuC {ECO:0000313|EMBL:AIL65432.1}; TaxID=1528098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales.;" source="Rickettsiales bacterium Ac37b.;"
scnpilot_expt_750_p_scaffold_1525_5
Rickettsiales bacterium Ac37b, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3761..4219
DNA (459bp) protein (153aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:AIL64559.1}; EC=2.7.8.5 {ECO:0000313|EMBL:AIL64559.1};; TaxID=1528098 species="Bacteria; Proteobacteria; Alphaprote
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Rickettsiaceae bacterium Os18 RepID=UPI00036C6F79
scnpilot_expt_750_p_scaffold_1525_6
unknown

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4377..4595
DNA (219bp) protein (73aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1525_7
unknown

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4631..5662
DNA (1032bp) protein (344aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1525_8
Rickettsia felis, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5693..6889)
DNA (1197bp) protein (399aa)
Putative to amino acid permeases n=1 Tax=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) RepID=Q4UL60_RICFE
to amino acid permeases
Putative to amino acid permeases {ECO:0000313|EMBL:AAY61713.1}; TaxID=315456 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fe
scnpilot_expt_750_p_scaffold_1525_9
Candidatus Midichloria mitochondrii, Candidatus Midichloria, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6918..7562)
DNA (645bp) protein (215aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Midichloria mitochondrii (strain IricVA) RepID=F7XVH9_MIDMI
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:AEI88678.1}; TaxID=696127 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Midichloriaceae; Candidatus
scnpilot_expt_750_p_scaffold_1525_10
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7756..8847)
DNA (1092bp) protein (364aa)
O-methyltransferase n=1 Tax=Synechocystis sp. PCC 7509 RepID=L8KNH4_9SYNC
O-demethylpuromycin-O-methyltransferase {ECO:0000313|EMBL:EPX58906.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobact
tcmN; O-methyltransferase family protein
scnpilot_expt_750_p_scaffold_1525_11
R_Gammaproteobacteria_37_14, Gammaproteobacteria, Proteobacteria, Bacteria

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8947..9516
DNA (570bp) protein (190aa)
Bacterial regulatory s, tetR family protein n=1 Tax=Piscirickettsia salmonis LF-89 = ATCC VR-1361 RepID=U4TIC3_PISSA
TetR family transcriptional regulator Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_37_14_curated
TetR family transcriptional regulator
scnpilot_expt_750_p_scaffold_1525_12
Rickettsia endosymbiont of Ixodes pacificus, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9520..10917)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IZ18_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KJW03450.1}; TaxID=1133329 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia.;" source="Ricketts
hypothetical protein
scnpilot_expt_750_p_scaffold_1525_13
GWF2_Melainabacteria_37_15_curated, Melainabacteria, Bacteria

Not on your lists

comp(10929..11483)
DNA (555bp) protein (185aa)
DNA-3-methyladenine glycosylase I; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] Tax=GWF2_Melainabacteria_37_15_curated
3-methyladenine DNA glycosylase id=4078665 bin=GWF2_Melainabacteria_37_15 species=Oxalobacter formigenes genus=Oxalobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Melainabacteria_37_15 organism_group=Melainabacteria
tag; hypothetical protein
scnpilot_expt_750_p_scaffold_1525_14
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11473..12303)
DNA (831bp) protein (277aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Shewanella frigidimarina (strain NCIMB 400) RepID=Q07YS0_SHEFN
Putrescine transport system permease protein PotI {ECO:0000313|EMBL:KEA63158.1}; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacteriu
binding-protein-dependent transport system inner membrane protein
scnpilot_expt_750_p_scaffold_1525_15
Rickettsia bellii, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12300..12941)
DNA (642bp) protein (214aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=336407 species="
Endonuclease III n=2 Tax=Rickettsia bellii RepID=Q1RGX7_RICBR
endonuclease III
scnpilot_expt_750_p_scaffold_1525_16
unknown

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comp(12901..13239)
DNA (339bp) protein (113aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1525_17
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13404..14132
DNA (729bp) protein (243aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-k
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2L9G3_9PROT
scnpilot_expt_750_p_scaffold_1525_18
marine actinobacterium MedAcidi-G2A, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14226..15128
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA027-C06 RepID=UPI0003623579
Carbohydrate kinase {ECO:0000313|EMBL:KIE49743.1}; Flags: Fragment;; TaxID=1550400 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G2A.;"
pfkB family carbohydrate kinase
scnpilot_expt_750_p_scaffold_1525_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15350..15832)
DNA (483bp) protein (161aa)
50S ribosomal protein L9 n=1 Tax=Sphingomonas melonis RepID=UPI000370CF55
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
50S ribosomal protein L9
scnpilot_expt_750_p_scaffold_1525_20
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15845..16102)
DNA (258bp) protein (86aa)
30S ribosomal protein S18 n=2 Tax=Rhodospirillum rubrum RepID=RS18_RHORT
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000255|HAMAP-Rule:MF_00270}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodosp
scnpilot_expt_750_p_scaffold_1525_21
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16105..16467)
DNA (363bp) protein (121aa)
30S ribosomal protein S6 n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=RS6_MAGSA
rpsF; 30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000255|HAMAP-Rule:MF_00360}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnet
scnpilot_expt_750_p_scaffold_1525_22
unknown

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16905..19382
DNA (2478bp) protein (826aa)

This feature has no annotations

Displaying 22 items

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