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scnpilot_expt_750_p_scaffold_406

Search features with annotation key words

Displaying items 1-30 of 135 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_406_1
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..564)
DNA (564bp) protein (188aa)
F0F1 ATP synthase subunit gamma n=1 Tax=Glaciibacter superstes RepID=UPI0003B57AD2
ATP synthase F0F1 subunit gamma
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1389
scnpilot_expt_750_p_scaffold_406_2
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(651..2276)
DNA (1626bp) protein (542aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit a
atpA; ATP synthase F0F1 subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha n=2 Tax=Microbacterium RepID=H8E219_9MICO
scnpilot_expt_750_p_scaffold_406_3
Cryobacterium roopkundense, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2326..3114)
DNA (789bp) protein (263aa)
atpH; F0F1 ATP synthase subunit delta (EC:3.6.3.14); K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14] id=7719345 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
atpH; ATP synthase delta subunit (EC:3.6.3.14)
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; T
scnpilot_expt_750_p_scaffold_406_4
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3114..3668)
DNA (555bp) protein (185aa)
atpF; F0F1 ATP synthase subunit B (EC:3.6.3.14)
F0F1 ATP synthase subunit B n=1 Tax=Curtobacterium sp. B8 RepID=UPI000345B6CF
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subuni
scnpilot_expt_750_p_scaffold_406_5
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3704..3919)
DNA (216bp) protein (72aa)
ATP synthase subunit C n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C3B7C
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
atpE; ATP synthase, C chain
scnpilot_expt_750_p_scaffold_406_6
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3965..4660)
DNA (696bp) protein (232aa)
F0F1 ATP synthase subunit A n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000287B552
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:
ATP synthase F0F1 subunit A
scnpilot_expt_750_p_scaffold_406_7
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4891..5364)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0003174725
Uncharacterized protein {ECO:0000313|EMBL:EPD86629.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 st
hypothetical protein
scnpilot_expt_750_p_scaffold_406_8
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5361..6497)
DNA (1137bp) protein (379aa)
rfe; undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase id=7719350 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase {ECO:0000313|EMBL:EAR25083.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
UDP-N-acetylmuramyl pentapeptide phosphotransferase
scnpilot_expt_750_p_scaffold_406_9
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6497..6961)
DNA (465bp) protein (155aa)
hypothetical protein id=7719351 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
TsaC protein {ECO:0000313|EMBL:EPR75948.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
Sua5/YciO/YrdC/YwlC family protein
scnpilot_expt_750_p_scaffold_406_10
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6955..7185)
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B3D552
Translation factor SUA5 {ECO:0000313|EMBL:KJC65528.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
translation factor
scnpilot_expt_750_p_scaffold_406_11
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7251..8036)
DNA (786bp) protein (262aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltra
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI0003828541
hemK; methyltransferase
scnpilot_expt_750_p_scaffold_406_12
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8080..9159)
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 n=1 Tax=Leifsonia xyli subsp. xyli (strain CTCB07) RepID=RF1_LEIXX
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000255|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000255|HAMAP-Rule:MF_00093};; TaxID=281090 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifs
scnpilot_expt_750_p_scaffold_406_13
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9164..10555)
DNA (1392bp) protein (464aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1348253 speci
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003467ED1
transcription termination factor Rho
scnpilot_expt_750_p_scaffold_406_14
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10695..11627)
DNA (933bp) protein (311aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|
thrB; hypothetical protein (EC:2.7.1.39)
Homoserine kinase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AH71_9ACTN
scnpilot_expt_750_p_scaffold_406_15
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11629..12711)
DNA (1083bp) protein (361aa)
Threonine synthase {ECO:0000256|PIRNR:PIRNR038945}; EC=4.2.3.1 {ECO:0000256|PIRNR:PIRNR038945};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source=
thrC; hypothetical protein (EC:4.2.3.1)
threonine synthase n=1 Tax=Agromyces italicus RepID=UPI0003B6EDFB
scnpilot_expt_750_p_scaffold_406_16
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12714..14024)
DNA (1311bp) protein (437aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" s
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Leifsonia rubra CMS 76R RepID=S7VZU2_9MICO
scnpilot_expt_750_p_scaffold_406_17
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14128..15567)
DNA (1440bp) protein (480aa)
lysA; hypothetical protein (EC:4.1.1.20)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HA
Diaminopimelate decarboxylase n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5B9I5_9MICO
scnpilot_expt_750_p_scaffold_406_18
Actinomyces naeslundii, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15587..16195)
DNA (609bp) protein (203aa)
GNAT family acetyltransferase n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B6E8A0
Acetyltransferase (GNAT) domain protein {ECO:0000313|EMBL:EJN83605.1}; TaxID=1115803 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces naeslundii
acetyltransferase
scnpilot_expt_750_p_scaffold_406_19
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(16226..17902)
DNA (1677bp) protein (559aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1589899 species="Bacteria; Act
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] id=7719363 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
argS; arginyl-tRNA synthetase
scnpilot_expt_750_p_scaffold_406_20
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18072..19307)
DNA (1236bp) protein (412aa)
MFS transporter n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003642182
Multidrug efflux protein YfmO {ECO:0000313|EMBL:KJL30763.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
permease of the major facilitator superfamily
scnpilot_expt_750_p_scaffold_406_21
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19304..19816)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KDK5_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM74265.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
MarR family transcriptional regulator
scnpilot_expt_750_p_scaffold_406_22
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19978..21804)
DNA (1827bp) protein (609aa)
ABC transporter related protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3JCK3_FRASU rbh
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADP78699.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
scnpilot_expt_750_p_scaffold_406_23
Arthrobacter sp. PAMC25486, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21894..23594
DNA (1701bp) protein (567aa)
hypothetical protein n=1 Tax=Kocuria sp. UCD-OTCP RepID=UPI00035DB9C5 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY00285.1}; TaxID=1494608 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. PAMC25486.;"
scnpilot_expt_750_p_scaffold_406_24
Streptomyces sp. 150FB, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23618..24082)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Brevibacterium casei S18 RepID=K9AW26_9MICO
Membrane protein {ECO:0000313|EMBL:KIF72898.1}; TaxID=1576605 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 150FB.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_406_25
Streptomyces sp. 150FB, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24164..24769
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Brevibacterium linens RepID=UPI0000510136
Uncharacterized protein {ECO:0000313|EMBL:KIF72899.1}; TaxID=1576605 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 150FB.;"
transcriptional regulator
scnpilot_expt_750_p_scaffold_406_26
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24817..25863
DNA (1047bp) protein (349aa)
sodium:proton antiporter n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B42E52
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbact
nhaA; sodium-proton antiporter
scnpilot_expt_750_p_scaffold_406_27
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25868..26938
DNA (1071bp) protein (357aa)
garK; glycerate kinase (EC:2.7.1.31)
Glycerate kinase I {ECO:0000313|EMBL:CAJ65408.1}; EC=2.7.1.31 {ECO:0000313|EMBL:CAJ65408.1};; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (
Glycerate kinase I n=1 Tax=Frankia alni (strain ACN14a) RepID=Q0RAY2_FRAAA
scnpilot_expt_750_p_scaffold_406_28
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26954..28102)
DNA (1149bp) protein (383aa)
cysteine desulfurase (EC:2.8.1.7)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000371F864
Cysteine desulfurase {ECO:0000313|EMBL:EAR25612.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
scnpilot_expt_750_p_scaffold_406_29
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28174..30228
DNA (2055bp) protein (685aa)
type II secretory pathway, pullulanase PulA; K02438 glycogen operon protein GlgX [EC:3.2.1.-] id=7721646 bin=CNBR_ACT species=Microbacterium laevaniformans genus=Microbacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Le
type II secretory pathway, pullulanase PulA
scnpilot_expt_750_p_scaffold_406_30
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30225..31064
DNA (840bp) protein (280aa)
ADP-dependent (S)-NAD(P)H-hydrate dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; EC=4.2.1.136 {ECO:0000256|HAMAP-Rule:MF_01965};; ADP-dependent NAD(P)HX dehydratase {ECO:0000256|HAMAP-Rule:MF_01965};
ADP-dependent (S)-NAD(P)H-hydrate dehydratase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AK92_9ACTN
sugar kinase
Displaying items 1-30 of 135 in total

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