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scnpilot_expt_750_p_scaffold_2708

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_2708_1
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..1452)
DNA (1452bp) protein (484aa)
type VI secretion protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B5D895
Type IV secretory system Conjugative DNA transfer {ECO:0000313|EMBL:KJL39028.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacter
hypothetical protein
scnpilot_expt_750_p_scaffold_2708_2
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1449..1970)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B62E47
Uncharacterized protein {ECO:0000313|EMBL:KJL39029.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_2708_3
Tetrasphaera australiensis, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2452..2931)
DNA (480bp) protein (160aa)
membrane protein n=1 Tax=Leucobacter chromiiresistens RepID=UPI000262A721
Putative integral membrane protein {ECO:0000313|EMBL:CCH75635.1}; TaxID=1193182 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera australiensis
hypothetical protein
scnpilot_expt_750_p_scaffold_2708_4
Tetrasphaera australiensis, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2928..4595)
DNA (1668bp) protein (556aa)
multidrug transporter n=1 Tax=Leucobacter chromiiresistens RepID=UPI000262A722 rbh
Drug resistance efflux protein {ECO:0000313|EMBL:CCH75639.1}; TaxID=1193182 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera australiensis Ben
drug resistance efflux protein
scnpilot_expt_750_p_scaffold_2708_5
Tetrasphaera australiensis, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4598..5041)
DNA (444bp) protein (148aa)
membrane protein n=1 Tax=Leucobacter chromiiresistens RepID=UPI000262A723
Uncharacterized protein {ECO:0000313|EMBL:CCH75640.1}; TaxID=1193182 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera australiensis Ben110.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_2708_6
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5083..5700)
DNA (618bp) protein (206aa)
LuxR family transcriptional regulator n=1 Tax=Leucobacter chromiiresistens RepID=UPI000262A724 rbh
Response regulator protein VraR {ECO:0000313|EMBL:KJL21282.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
two-component system response regulator
scnpilot_expt_750_p_scaffold_2708_7
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5697..6992)
DNA (1296bp) protein (432aa)
Sensor histidine kinase LiaS {ECO:0000313|EMBL:KJL21281.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KJL21281.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.
histidine kinase n=1 Tax=Leucobacter chromiiresistens RepID=UPI000262A982 rbh
hypothetical protein
scnpilot_expt_750_p_scaffold_2708_8
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6958..9051)
DNA (2094bp) protein (698aa)
membrane protein n=1 Tax=Leucobacter chromiiresistens RepID=UPI000262A983 rbh
Membrane protein YdfJ {ECO:0000313|EMBL:KJL21280.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_2708_9
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(9163..10092)
DNA (930bp) protein (310aa)
Integrase catalytic region n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SAN4_GEOOG
Integrase catalytic domain-containing protein
Integrase catalytic region {ECO:0000313|EMBL:ADB73963.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus
scnpilot_expt_750_p_scaffold_2708_10
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(10089..10415)
DNA (327bp) protein (109aa)
Transposase IS3/IS911 family protein n=1 Tax=Segniliparus rotundus (strain ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 / JCM 13578) RepID=D6ZAT7_SEGRD
Uncharacterized protein {ECO:0000313|EMBL:CDK00390.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
transposase IS3/IS911 family protein
scnpilot_expt_750_p_scaffold_2708_11
unknown

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comp(10464..10640)
DNA (177bp) protein (59aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_2708_12
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10672..11022
DNA (351bp) protein (117aa)
TrwC relaxase n=1 Tax=Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) RepID=C7NLP0_KYTSD
Conjugal transfer protein {ECO:0000313|EMBL:EXJ52921.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
TrwC relaxase
scnpilot_expt_750_p_scaffold_2708_13
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11172..11549
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Arthrobacter sp. TB 23 RepID=UPI0002E1CA3E
Uncharacterized protein {ECO:0000313|EMBL:KJL45222.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_2708_14
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11782..12546
DNA (765bp) protein (255aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=312284 species="Bacteria; Actinobacteria.;" source
ackA2; hypothetical protein (EC:2.7.2.1)
Acetate kinase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AKA3_9ACTN
Displaying 14 items

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