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scnpilot_expt_750_p_scaffold_1812_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1812_curated_1
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..533)
DNA (531bp) protein (177aa)
Nitrite reductase {ECO:0000313|EMBL:EXI73901.1}; EC=1.7.2.1 {ECO:0000313|EMBL:EXI73901.1};; Flags: Precursor;; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
Hydroxylamine reductase (EC:1.7.99.1); K15864 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
Hydroxylamine reductase (EC:1.7.99.1); K15864 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
Hydroxylamine reductase (EC:1.7.99.1); K15864 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
scnpilot_expt_750_p_scaffold_1812_curated_2
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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740..1531
DNA (792bp) protein (264aa)
uroporphyrin-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
uroporphyrin-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
uroporphyrin-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
Uroporphyrin-III C-methyltransferase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RR97_ACCPU
scnpilot_expt_750_p_scaffold_1812_curated_3
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1520..2419)
DNA (900bp) protein (300aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937}; Short=DHNA-octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937};; EC=2.5.1.74 {ECO:0000256|HAMAP-Rule:MF_01937};; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
1,4-dihydroxy-2-naphthoate octaprenyltransferase; K02548 1,4-dihydroxy-2-naphthoate octaprenyltransferase [EC:2.5.1.74 2.5.1.-]
1,4-dihydroxy-2-naphthoate octaprenyltransferase; K02548 1,4-dihydroxy-2-naphthoate octaprenyltransferase [EC:2.5.1.74 2.5.1.-]
1,4-dihydroxy-2-naphthoate octaprenyltransferase; K02548 1,4-dihydroxy-2-naphthoate octaprenyltransferase [EC:2.5.1.74 2.5.1.-]
scnpilot_expt_750_p_scaffold_1812_curated_4
unknown

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comp(2581..2970)
DNA (390bp) protein (130aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1812_curated_5
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3538..4596
DNA (1059bp) protein (353aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
scnpilot_expt_750_p_scaffold_1812_curated_6
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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4586..5704
DNA (1119bp) protein (373aa)
tRNA-guanine transglycosylase, queuosine-34-forming; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
tRNA-guanine transglycosylase, queuosine-34-forming; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
tRNA-guanine transglycosylase, queuosine-34-forming; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
scnpilot_expt_750_p_scaffold_1812_curated_7
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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5743..6264
DNA (522bp) protein (174aa)
PAS domain S-box n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QI53_AZOSU
PAS domain S-box
PAS domain S-box
PAS domain S-box
scnpilot_expt_750_p_scaffold_1812_curated_8
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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6239..7537
DNA (1299bp) protein (433aa)
Methyl-accepting chemotaxis protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QI54_AZOSU
methyl-accepting chemotaxis protein
methyl-accepting chemotaxis protein
methyl-accepting chemotaxis protein
scnpilot_expt_750_p_scaffold_1812_curated_9
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7670..7996
DNA (327bp) protein (109aa)
Preprotein translocase, YajC subunit n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRY0_ACCPU
Preprotein translocase subunit YajC {ECO:0000313|EMBL:EXI89330.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
yajC; preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
yajC; preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
scnpilot_expt_750_p_scaffold_1812_curated_10
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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8072..9961
DNA (1890bp) protein (630aa)
Protein translocase subunit SecD n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRY1_ACCPU
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD
scnpilot_expt_750_p_scaffold_1812_curated_11
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9974..10918
DNA (945bp) protein (315aa)
Protein-export membrane protein SecF n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRY2_ACCPU
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF
scnpilot_expt_750_p_scaffold_1812_curated_12
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10991..11605)
DNA (615bp) protein (205aa)
Transcriptional regulator n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHA4_AZOSU
transcriptional regulator; K03577 TetR/AcrR family transcriptional regulator, acrAB operon repressor
transcriptional regulator; K03577 TetR/AcrR family transcriptional regulator, acrAB operon repressor
transcriptional regulator; K03577 TetR/AcrR family transcriptional regulator, acrAB operon repressor
scnpilot_expt_750_p_scaffold_1812_curated_13
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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11818..13047
DNA (1230bp) protein (410aa)
RND family efflux transporter, MFP subunit n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHA3_AZOSU
RND family efflux transporter, MFP subunit; K03585 membrane fusion protein
RND family efflux transporter, MFP subunit; K03585 membrane fusion protein
RND family efflux transporter, MFP subunit; K03585 membrane fusion protein
scnpilot_expt_750_p_scaffold_1812_curated_14
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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13060..16215
DNA (3156bp) protein (1052aa)
Hydrophobe/amphiphile efflux-1 HAE1 n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47E30_DECAR
hydrophobe/amphiphile efflux-1 HAE1; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
hydrophobe/amphiphile efflux-1 HAE1; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
hydrophobe/amphiphile efflux-1 HAE1; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
scnpilot_expt_750_p_scaffold_1812_curated_15
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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16212..17675
DNA (1464bp) protein (488aa)
Efflux transporter, outer membrane factor lipoprotein, NodT family n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHA1_AZOSU
NodT family efflux transporter outer membrane lipoprotein
NodT family efflux transporter outer membrane lipoprotein
NodT family efflux transporter outer membrane lipoprotein
scnpilot_expt_750_p_scaffold_1812_curated_16

Not on your lists

comp(17769..18098)
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=uncultured prokaryote AT3 RepID=D3W8E4_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ACX33893.1}; TaxID=672202 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote AT3.;"
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_1812_curated_17
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18118..18435)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRY6_ACCPU
hypothetical protein
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_1812_curated_18
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18436..19803)
DNA (1368bp) protein (456aa)
adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2]
adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2]
adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2]
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
scnpilot_expt_750_p_scaffold_1812_curated_19
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19930..20538
DNA (609bp) protein (203aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRY8_ACCPU
scnpilot_expt_750_p_scaffold_1812_curated_20
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20712..22124
DNA (1413bp) protein (471aa)
Transcriptional regulator, GntR family n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47H62_DECAR
GntR family transcriptional regulator
GntR family transcriptional regulator
GntR family transcriptional regulator
scnpilot_expt_750_p_scaffold_1812_curated_21
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(22119..22424)
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47H61_DECAR
hypothetical protein
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_1812_curated_22
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22428..23075)
DNA (648bp) protein (216aa)
denitrification protein NorE; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
denitrification protein NorE; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
denitrification protein NorE; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Putative denitrification protein NorE n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47H60_DECAR
scnpilot_expt_750_p_scaffold_1812_curated_23
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

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23359..23829
DNA (471bp) protein (157aa)
Two component histidine kinase, putative n=1 Tax=Ricinus communis RepID=B9TBS4_RICCO
two component histidine kinase, putative
two component histidine kinase, putative
two component histidine kinase, putative
scnpilot_expt_750_p_scaffold_1812_curated_24
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23870..25327
DNA (1458bp) protein (486aa)
Transcriptional regulator with HTH domain and aminotransferase domain n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QIC9_AZOSU
transcriptional regulator with HTH domain and aminotransferase domain
transcriptional regulator with HTH domain and aminotransferase domain
transcriptional regulator with HTH domain and aminotransferase domain
scnpilot_expt_750_p_scaffold_1812_curated_25
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25541..25759)
DNA (219bp) protein (73aa)
Nitrous-oxide reductase (EC:1.7.2.4); K00376 nitrous-oxide reductase [EC:1.7.2.4]
Nitrous-oxide reductase (EC:1.7.2.4); K00376 nitrous-oxide reductase [EC:1.7.2.4]
Nitrous-oxide reductase (EC:1.7.2.4); K00376 nitrous-oxide reductase [EC:1.7.2.4]
Nitrous-oxide reductase {ECO:0000313|EMBL:EXI86230.1}; EC=1.7.2.4 {ECO:0000313|EMBL:EXI86230.1};; Flags: Precursor;; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
truncated, C-terminus only (no active sites) Rose Kantor (12/9/15)
Displaying 25 items

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