ggKbase | organisms

Consensus taxonomy: Bacteroidales → Bacteroidia → Bacteroidetes → Bacteria

Metagenomic Context

Auto curated genome
Original version: SCNPILOT_EXPT_750_P_Bacteroidia_45_5.3_partial

Properties

Avg. coverage: 1.00 Longest contig: 28.04 Kbp Bin length: 3.86 Mbp GC content: 44.99 %

Contigs count: 907 Features count: 3853 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 45 / 55 MC: 1 BSCG 44 / 51 MC: 3 ASCG 13 / 38 MC: 3

Displaying items 751-800 of 907 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_expt_750_p_scaffold_16036_curated Species: CG_Arma_01 (50%)	2	2345 bp	35.69	1.00	95.82
scnpilot_expt_750_p_scaffold_6679_curated Species: Dysgonomonas gadei (50%)	2	4540 bp	47.05	1.00	94.30
scnpilot_expt_750_p_scaffold_6701_curated Species: Dysgonomonas mossii (50%)	2	4527 bp	42.28	1.00	99.14
scnpilot_expt_750_p_scaffold_16249_curated Species: Dysgonomonas gadei (100%)	2	2325 bp	47.44	1.00	87.10
scnpilot_expt_750_p_scaffold_43000_curated Species: Niastella koreensis (50%)	2	1263 bp	45.21	1.00	87.41
scnpilot_expt_750_p_scaffold_43157_curated Species: Dysgonomonas mossii (50%)	2	1260 bp	47.06	1.00	90.95
scnpilot_expt_750_p_scaffold_6748_curated Species: Bacteroides ovatus (50%)	2	4505 bp	44.77	1.00	86.50
scnpilot_expt_750_p_scaffold_43776_curated Species: Bacteroides dorei (50%)	2	1250 bp	42.24	1.00	95.04
scnpilot_expt_750_p_scaffold_43847_curated Species: Bacteroides plebeius (50%)	2	1249 bp	39.55	1.00	96.08
scnpilot_expt_750_p_scaffold_16490_curated Species: Paraprevotella clara (50%)	2	2300 bp	45.39	1.00	99.39
scnpilot_expt_750_p_scaffold_44027_curated Species: Bacteroides sp. D22 (50%)	2	1246 bp	33.31	1.00	73.19
scnpilot_expt_750_p_scaffold_44084_curated Species: Dysgonomonas mossii (50%)	2	1245 bp	44.98	1.00	91.81
scnpilot_expt_750_p_scaffold_16664_curated Species: Flavobacterium psychrophilum (50%)	2	2284 bp	41.77	1.00	97.99
scnpilot_expt_750_p_scaffold_44153_curated Species: Odoribacter splanchnicus (50%)	2	1244 bp	51.93	1.00	80.55
scnpilot_expt_750_p_scaffold_44271_curated Species: Dysgonomonas gadei (50%)	2	1242 bp	47.75	1.00	98.79
scnpilot_expt_750_p_scaffold_16744_curated Species: Dysgonomonas mossii (50%)	2	2276 bp	46.05	1.00	99.25
scnpilot_expt_750_p_scaffold_44717_curated Species: Dysgonomonas gadei (50%)	2	1235 bp	40.32	1.00	71.42
scnpilot_expt_750_p_scaffold_16755_curated Species: Bacteroides uniformis (50%)	2	2275 bp	45.49	1.00	72.53
scnpilot_expt_750_p_scaffold_45092_curated Species: Porphyromonadaceae bacterium ING2-E5B (50%)	2	1229 bp	41.50	1.00	90.56
scnpilot_expt_750_p_scaffold_16894_curated Species: Dysgonomonas mossii (50%)	2	2261 bp	49.80	1.00	100.04
scnpilot_expt_750_p_scaffold_45563_curated Species: Bacteroides ovatus (50%)	2	1222 bp	40.92	1.00	84.94
scnpilot_expt_750_p_scaffold_16988_curated Species: Tannerella forsythia (50%)	2	2252 bp	48.27	1.00	96.58
scnpilot_expt_750_p_scaffold_45919_curated Species: Dysgonomonas gadei (50%)	2	1216 bp	45.07	1.00	92.27
scnpilot_expt_750_p_scaffold_17039_curated Species: Jejuia pallidilutea (50%)	2	2246 bp	37.80	1.00	93.50
scnpilot_expt_750_p_scaffold_46613_curated Species: Dysgonomonas mossii (100%)	2	1206 bp	38.81	1.00	97.51
scnpilot_expt_750_p_scaffold_46885_curated Species: Bacteroides fragilis (50%)	2	1201 bp	44.13	1.00	80.18
scnpilot_expt_750_p_scaffold_17268_curated Species: Odoribacter splanchnicus (50%)	2	2225 bp	48.31	1.00	91.42
scnpilot_expt_750_p_scaffold_48018_curated Species: Bacteroides coprophilus (50%)	2	1184 bp	49.41	1.00	82.85
scnpilot_expt_750_p_scaffold_48150_curated Species: Paludibacter propionicigenes (100%)	2	1182 bp	50.76	1.00	93.91
scnpilot_expt_750_p_scaffold_17356_curated Species: Bacteroides sp. CAG:530 (50%)	2	2217 bp	41.05	1.00	92.69
scnpilot_expt_750_p_scaffold_48189_curated Species: Flavihumibacter petaseus (50%)	2	1181 bp	42.42	1.00	92.46
scnpilot_expt_750_p_scaffold_7255_curated Species: Dysgonomonas gadei (50%)	2	4252 bp	48.64	1.00	94.40
scnpilot_expt_750_p_scaffold_17360_curated Species: Bacteroides sp. 2_1_33B (50%)	2	2217 bp	42.08	1.00	81.87
scnpilot_expt_750_p_scaffold_48290_curated Species: Jejuia pallidilutea (50%)	2	1180 bp	35.42	1.00	100.17
scnpilot_expt_750_p_scaffold_48350_curated Species: Dysgonomonas mossii (50%)	2	1179 bp	45.38	1.00	90.59
scnpilot_expt_750_p_scaffold_48352_curated Species: Bacteroides uniformis CAG:3 (50%)	2	1179 bp	40.80	1.00	67.18
scnpilot_expt_750_p_scaffold_48803_curated Species: Parabacteroides johnsonii (50%)	2	1172 bp	42.75	1.00	98.81
scnpilot_expt_750_p_scaffold_17612_curated Species: Bacteroides fragilis (50%)	2	2194 bp	50.91	1.00	99.41
scnpilot_expt_750_p_scaffold_17729_curated Species: Bacteroides sp. CAG:709 (50%)	2	2182 bp	33.32	1.00	29.01
scnpilot_expt_750_p_scaffold_18074_curated Species: Flammeovirgaceae bacterium 311 (50%)	2	2154 bp	44.20	1.00	99.30
scnpilot_expt_750_p_scaffold_49636_curated Species: Pedobacter sp. NL19 (50%)	2	1160 bp	32.67	1.00	70.86
scnpilot_expt_750_p_scaffold_18172_curated Species: Dysgonomonas mossii (50%)	2	2147 bp	46.62	1.00	91.10
scnpilot_expt_750_p_scaffold_49877_curated Species: Enhygromyxa salina (50%)	2	1157 bp	37.86	1.00	68.19
scnpilot_expt_750_p_scaffold_18303_curated Species: RLO_Flavobacteria_35_11 (100%)	2	2138 bp	42.89	1.00	98.92
scnpilot_expt_750_p_scaffold_50338_curated Species: Prevotella maculosa (50%)	2	1151 bp	38.40	1.00	74.54
scnpilot_expt_750_p_scaffold_18666_curated Species: BJP_08E140C01_10KDA_Chromatiales_49_130 (50%)	2	2111 bp	54.29	1.00	54.29
scnpilot_expt_750_p_scaffold_18854_curated Species: Parabacteroides goldsteinii (50%)	2	2099 bp	40.02	1.00	98.62
scnpilot_expt_750_p_scaffold_50885_curated Species: Parabacteroides gordonii (50%)	2	1143 bp	47.42	1.00	88.71
scnpilot_expt_750_p_scaffold_7664_curated Species: Coprobacter fastidiosus (50%)	2	4047 bp	49.69	1.00	98.74
scnpilot_expt_750_p_scaffold_51379_curated Species: Dysgonomonas mossii (50%)	2	1137 bp	38.35	1.00	76.25

Displaying items 751-800 of 907 in total

scnpilot_dereplicated_Bacteroidales_2

scnpilot-dereplicated_Bacteroidales_45_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

scnpilot_dereplicated_Bacteroidales_2

scnpilot-dereplicated_Bacteroidales_45_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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