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scnpilot_expt_750_p_scaffold_455_curated

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_455_curated_1
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3..245)
DNA (243bp) protein (81aa)
elongation factor Tu n=1 Tax=Microbacterium yannicii RepID=UPI0002ECDFF7
elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
scnpilot_expt_750_p_scaffold_455_curated_2
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(344..2458)
DNA (2115bp) protein (705aa)
elongation factor G n=1 Tax=Microbacteriaceae RepID=UPI00035CDF87
elongation factor G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
scnpilot_expt_750_p_scaffold_455_curated_3
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(2531..3001)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B4DC16
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
rpsG; 30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
scnpilot_expt_750_p_scaffold_455_curated_4
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3007..3384)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1MPJ4_9MICO
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
scnpilot_expt_750_p_scaffold_455_curated_5
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3654..4511)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000287D0C9
Uncharacterized protein {ECO:0000313|EMBL:EAR25710.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_455_curated_6
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4595..9046)
DNA (4452bp) protein (1484aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' id=7720829 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
scnpilot_expt_750_p_scaffold_455_curated_7
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9100..12627)
DNA (3528bp) protein (1176aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
rpoB; DNA-directed RNA polymerase, beta subunit/140 kD subunit; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta id=7720828 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
scnpilot_expt_750_p_scaffold_455_curated_8
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12936..13784
DNA (849bp) protein (283aa)
Spermidine synthase {ECO:0000313|EMBL:EPR76418.1}; EC=2.5.1.16 {ECO:0000313|EMBL:EPR76418.1};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
Putative uncharacterized protein id=7720824 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
scnpilot_expt_750_p_scaffold_455_curated_9
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13859..14374
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Leifsonia xyli subsp. cynodontis DSM 46306 RepID=U3P560_LEIXC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW40604.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
scnpilot_expt_750_p_scaffold_455_curated_10
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14388..14882
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI0003647966
Uncharacterized protein {ECO:0000313|EMBL:EYT52124.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_455_curated_11
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14879..15427)
DNA (549bp) protein (183aa)
Putative uncharacterized protein id=7720809 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EAR23760.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_455_curated_12
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15472..17502)
DNA (2031bp) protein (677aa)
hypothetical protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B6B026
Uncharacterized protein {ECO:0000313|EMBL:KJC63883.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_455_curated_13
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17862..18638
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Microbacterium RepID=UPI00035CCCF4
Uncharacterized protein {ECO:0000313|EMBL:EZP29909.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_455_curated_14
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18693..20012
DNA (1320bp) protein (440aa)
DNA repair protein radA id=7720763 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
DNA repair protein RadA
scnpilot_expt_750_p_scaffold_455_curated_15
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20080..20979)
DNA (900bp) protein (300aa)
pabC; 4-amino-4-deoxychorismate lyase (EC:4.1.3.38); K02619 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
Branched-chain amino acid aminotransferase id=7720760 bin=CNBR_ACT species=Propionibacterium acidipropionici genus=Propionibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:EYT63472.1}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
scnpilot_expt_750_p_scaffold_455_curated_16
unknown

Not on your lists

21083..21262
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_455_curated_17
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21201..21626)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Leifsonia xyli subsp. cynodontis DSM 46306 RepID=U3P513_LEIXC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW40549.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
scnpilot_expt_750_p_scaffold_455_curated_18
Cryobacterium roopkundense, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21696..22196)
DNA (501bp) protein (167aa)
N-acetylglutamate synthase; K00619 amino-acid N-acetyltransferase [EC:2.3.1.1]
N-acetylglutamate synthase n=1 Tax=Agromyces subbeticus RepID=UPI0003B2EC65
N-acetylglutamate synthase {ECO:0000313|EMBL:KGJ78540.1}; TaxID=1001240 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium roopkundense.;"
scnpilot_expt_750_p_scaffold_455_curated_19
unknown

Not on your lists

22254..22709
DNA (456bp) protein (152aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_455_curated_20
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22731..25220)
DNA (2490bp) protein (830aa)
Contig_27, whole genome shotgun sequence {ECO:0000313|EMBL:KIU03328.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
ATP-dependent Clp protease, ATP-binding subunit id=7720751 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
clpC; ATP-dependent protease, ATPase subunit; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC
scnpilot_expt_750_p_scaffold_455_curated_21
unknown

Not on your lists

25347..25484
DNA (138bp) protein (46aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_455_curated_22
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25600..26886
DNA (1287bp) protein (429aa)
monooxygenase; K00492 [EC:1.14.13.-] rbh
hypothetical protein n=1 Tax=Citricoccus sp. CH26A RepID=UPI000255DFB5
Monooxygenase {ECO:0000313|EMBL:CDK00378.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
scnpilot_expt_750_p_scaffold_455_curated_23
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26914..27090)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1MPY0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:ERG63986.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_455_curated_24
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27264..28763)
DNA (1500bp) protein (500aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
lysS; lysyl-tRNA synthetase (class II); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase id=7720742 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
scnpilot_expt_750_p_scaffold_455_curated_25
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(28817..29581)
DNA (765bp) protein (255aa)
dehydrogenase id=24545538 bin=RBG_19FT_COMBO_GAL15_69_19 species=Deinococcus peraridilitoris genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
dehydrogenase
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
scnpilot_expt_750_p_scaffold_455_curated_26
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29578..30765)
DNA (1188bp) protein (396aa)
Nitrilotriacetate monooxygenase component B {ECO:0000313|EMBL:AIY19229.1}; EC=1.14.13.- {ECO:0000313|EMBL:AIY19229.1};; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
Monooxygenase/oxidoreductase n=2 Tax=Ketogulonicigenium vulgare RepID=E3EYI6_KETVY
monooxygenase/oxidoreductase
scnpilot_expt_750_p_scaffold_455_curated_27
Streptomyces sp. SirexAA-E, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30762..31973)
DNA (1212bp) protein (404aa)
amidohydrolase (EC:3.5.1.47); K01451 hippurate hydrolase [EC:3.5.1.32]
Amidohydrolase {ECO:0000313|EMBL:AEN10077.1}; EC=3.5.1.47 {ECO:0000313|EMBL:AEN10077.1};; TaxID=862751 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. (strain SirexAA-E / ActE).;"
Amidohydrolase n=1 Tax=Streptomyces sp. SirexAA-E RepID=G2NC15_9ACTO
scnpilot_expt_750_p_scaffold_455_curated_28
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31973..33250)
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Amycolatopsis methanolica RepID=UPI00036D8BE5
Zn-dependent dipeptidase microsomal dipeptidase {ECO:0000313|EMBL:AIJ23216.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
Zn-dependent dipeptidase microsomal dipeptidase
scnpilot_expt_750_p_scaffold_455_curated_29
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33247..34281)
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00036E9DA9
Amidohydrolase {ECO:0000313|EMBL:KFG01610.1}; TaxID=1930 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabiei.;"
putative metal-dependent hydrolase of the TIM-barrel fold protein
scnpilot_expt_750_p_scaffold_455_curated_30
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34293..35447)
DNA (1155bp) protein (385aa)
Putative FMNH2-dependent dimethyl sulfone monooxygenase n=1 Tax=Gordonia polyisoprenivorans NBRC 16320 RepID=H0RB76_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:ETW97669.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
luciferase family protein
Displaying items 1-30 of 86 in total

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