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scnpilot_expt_750_p_scaffold_1281_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1281_curated_1
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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921..1769
DNA (849bp) protein (283aa)
hypothetical protein id=7721277 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN02045.1}; TaxID=443906 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382).;"
scnpilot_expt_750_p_scaffold_1281_curated_2
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1766..2773
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) RepID=B0RHE3_CLAMS
Haloacid dehalogenase {ECO:0000313|EMBL:AJW80502.1}; TaxID=33014 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. insidiosus.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1281_curated_3
unknown

Not on your lists

2791..2934
DNA (144bp) protein (48aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1281_curated_4
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2927..3754
DNA (828bp) protein (276aa)
tlyA; hemolysin; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
hemolysin n=1 Tax=Agromyces italicus RepID=UPI0003B54376
Hemolysin {ECO:0000313|EMBL:EYT61059.1}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
scnpilot_expt_750_p_scaffold_1281_curated_5
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3756..4682
DNA (927bp) protein (309aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
ppnK; sugar kinase; K00858 NAD+ kinase [EC:2.7.1.23]
inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000288A53F
scnpilot_expt_750_p_scaffold_1281_curated_6
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4732..6303
DNA (1572bp) protein (524aa)
DNA repair protein RecN n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00035DBD24
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
recN; DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N) rbh
scnpilot_expt_750_p_scaffold_1281_curated_7
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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6435..8192
DNA (1758bp) protein (586aa)
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] id=7721270 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
CTP synthetase
scnpilot_expt_750_p_scaffold_1281_curated_8
Rathayibacter toxicus, Rathayibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8189..8872
DNA (684bp) protein (228aa)
putative NTP pyrophosphatase; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13]
Putative NTP pyrophosphatase n=1 Tax=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) RepID=A5CSH4_CLAM3
Strain 70137, complete genome {ECO:0000313|EMBL:AJM77432.1}; TaxID=145458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Rathayibacter.;" source="Rathayibacter toxicus.;"
scnpilot_expt_750_p_scaffold_1281_curated_9
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8845..9768
DNA (924bp) protein (308aa)
tyrosine recombinase XerD n=1 Tax=Curtobacterium sp. B8 RepID=UPI00034CA985
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
site-specific tyrosine recombinase XerD
scnpilot_expt_750_p_scaffold_1281_curated_10
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9908..10855
DNA (948bp) protein (316aa)
Chromosome (Plasmid) partitioning protein ParA n=1 Tax=Leifsonia rubra CMS 76R RepID=S7X8P8_9MICO
Chromosome (Plasmid) partitioning protein ParA {ECO:0000313|EMBL:EPR75434.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
parA; ATPase; K03496 chromosome partitioning protein
scnpilot_expt_750_p_scaffold_1281_curated_11
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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10896..11762
DNA (867bp) protein (289aa)
chromosome segregation protein ScpA n=1 Tax=Leifsonia sp. 109 RepID=UPI000366A66B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW42113.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
scnpilot_expt_750_p_scaffold_1281_curated_12
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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11752..12381
DNA (630bp) protein (210aa)
putative transcriptional regulator; K06024 segregation and condensation protein B id=7721265 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
transcriptional regulator containing the HTH domain; K06024 segregation and condensation protein B
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
scnpilot_expt_750_p_scaffold_1281_curated_13
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12374..13174
DNA (801bp) protein (267aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
rluA; putative pseudouridine synthase (EC:4.2.1.70); K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
RNA pseudouridine synthase n=1 Tax=Microbacterium paraoxydans RepID=UPI000381B6B8
scnpilot_expt_750_p_scaffold_1281_curated_14
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13171..14253
DNA (1083bp) protein (361aa)
Prephenate dehydrogenase {ECO:0000313|EMBL:EAR25255.1}; EC=1.3.1.12 {ECO:0000313|EMBL:EAR25255.1};; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
tyrA; prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] rbh
Prephenate dehydrogenase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AHP9_9ACTN
scnpilot_expt_750_p_scaffold_1281_curated_15
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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14250..14975
DNA (726bp) protein (242aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
cmk; cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14]
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003689CB9
scnpilot_expt_750_p_scaffold_1281_curated_16
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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14972..16492
DNA (1521bp) protein (507aa)
GTP-binding protein Der n=1 Tax=Humibacter albus RepID=UPI0003B3F602
GTP-binding protein EngA
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
scnpilot_expt_750_p_scaffold_1281_curated_17
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16504..16887)
DNA (384bp) protein (128aa)
Thioredoxin n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6W697_KINRD
thioredoxin
Thioredoxin {ECO:0000313|EMBL:ABS02336.1}; TaxID=266940 species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
scnpilot_expt_750_p_scaffold_1281_curated_18
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16890..18380)
DNA (1491bp) protein (497aa)
Putative transport protein n=1 Tax=Leifsonia rubra CMS 76R RepID=S7W154_9MICO
Putative transport protein {ECO:0000313|EMBL:EPR75427.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
EmrB/QacA subfamily drug resistance transporter
scnpilot_expt_750_p_scaffold_1281_curated_19
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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18595..20976
DNA (2382bp) protein (794aa)
hypothetical protein n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI0003638F05
Uncharacterized protein {ECO:0000313|EMBL:EYT56283.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
ATP-dependent transcriptional regulator; K03556 LuxR family transcriptional regulator, maltose regulon positive regulatory protein
scnpilot_expt_750_p_scaffold_1281_curated_20
Arthrobacter crystallopoietes, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(20989..21798)
DNA (810bp) protein (270aa)
bacteriocin n=1 Tax=Humibacter albus RepID=UPI0003B40ADC
Bacteriocin linocin/CFP29 protein {ECO:0000313|EMBL:EMY34274.1}; TaxID=1246476 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter crystallopoietes BAB-32.;"
bacteriocin family protein
scnpilot_expt_750_p_scaffold_1281_curated_21
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21812..22858)
DNA (1047bp) protein (349aa)
peroxidase n=1 Tax=Humibacter albus RepID=UPI0003B35C37
Peroxidase {ECO:0000313|EMBL:ESY68409.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
Dyp-type peroxidase family; K07223 putative iron-dependent peroxidase
scnpilot_expt_750_p_scaffold_1281_curated_22
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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23062..23622
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI000312B56B
Permease {ECO:0000313|EMBL:EYT54812.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1281_curated_23
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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23619..24407
DNA (789bp) protein (263aa)
hypothetical protein id=7721679 bin=CNBR_ACT species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:CDK00622.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1281_curated_24
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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24395..25963
DNA (1569bp) protein (523aa)
hypothetical protein n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000289B014
Uncharacterized protein {ECO:0000313|EMBL:EYT54814.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1281_curated_25
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26034..26480)
DNA (447bp) protein (149aa)
acyl-CoA thioester hydrolase (EC:3.1.2.-)
thioesterase n=1 Tax=Leucobacter chromiiresistens RepID=UPI000262A95E
Thioesterase {ECO:0000313|EMBL:EYT56348.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
scnpilot_expt_750_p_scaffold_1281_curated_26
Leucobacter komagatae, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(26550..26744)
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI000369B929
Leucobacter komagatae strain VKM ST2845 L_komagatae_03, whole genome shotgun sequence {ECO:0000313|EMBL:KIP53387.1}; TaxID=55969 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter komagatae.;"
scnpilot_expt_750_p_scaffold_1281_curated_27
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(26849..27448)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Leucobacter salsicius RepID=UPI0003610107
Uncharacterized protein {ECO:0000313|EMBL:EQM79535.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1281_curated_28
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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27576..28538
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Microbacterium sp. 11MF RepID=UPI0003655462
Exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:CDK00625.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
exopolysaccharide biosynthesis protein
scnpilot_expt_750_p_scaffold_1281_curated_29
unknown

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28535..28630
DNA (96bp) protein (32aa)

This feature has no annotations

Displaying 29 items

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