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scnpilot_expt_750_p_scaffold_304_curated

Search features with annotation key words

Displaying items 1-30 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_304_curated_1
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

196..1104
DNA (909bp) protein (303aa)
SMP-30/gluconolaconase/LRE domain-containing protein; K01053 gluconolactonase [EC:3.1.1.17]
gluconolactonase n=1 Tax=Pedobacter agri RepID=UPI00029AD5CD
Gluconolactonase {ECO:0000313|EMBL:KEQ29016.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
scnpilot_expt_750_p_scaffold_304_curated_2
Escherichia fergusonii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1179..3869
DNA (2691bp) protein (897aa)
Uncharacterized protein n=3 Tax=Escherichia fergusonii RepID=B7LV63_ESCF3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAQ89689.1}; TaxID=585054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73).;"
scnpilot_expt_750_p_scaffold_304_curated_3
Capnocytophaga gingivalis, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3860..5209
DNA (1350bp) protein (450aa)
SWIM zinc finger domain protein n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M8F1_CAPGI
SWIM zinc finger domain protein {ECO:0000313|EMBL:EEK13461.1}; TaxID=553178 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga gingivalis ATCC 33624.;"
zinc finger SWIM domain-containing protein
scnpilot_expt_750_p_scaffold_304_curated_4
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5224..6177)
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G1E3_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI90852.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_304_curated_5
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6304..7533
DNA (1230bp) protein (410aa)
Hydroxymethylglutaryl-coenzyme A reductase {ECO:0000313|EMBL:EFK59944.1}; EC=1.1.1.34 {ECO:0000313|EMBL:EFK59944.1};; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
3-hydroxy-3-methylglutaryl-coenzyme a reductase (EC:1.1.1.34); K00021 hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34]
Hydroxymethylglutaryl-coenzyme A reductase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VIP2_9SPHI
scnpilot_expt_750_p_scaffold_304_curated_6
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7523..8104
DNA (582bp) protein (194aa)
putative CDP-alcohol phosphatidyltransferase (EC:2.7.8.-); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-alcohol phosphatidyltransferase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VIP1_9SPHI
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:EFK59943.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
scnpilot_expt_750_p_scaffold_304_curated_7
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8107..8817
DNA (711bp) protein (237aa)
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:EFK59942.1}; EC=2.7.7.41 {ECO:0000313|EMBL:EFK59942.1};; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
putative phosphatidate cytidylyltransferase (EC:2.7.7.-)
Phosphatidate cytidylyltransferase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VIP0_9SPHI
scnpilot_expt_750_p_scaffold_304_curated_8
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8828..9499
DNA (672bp) protein (224aa)
Putative phosphatidate cytidylyltransferase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G1D8_9SPHI
Putative phosphatidate cytidylyltransferase {ECO:0000313|EMBL:EEI90847.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
phosphatidate cytidylyltransferase
scnpilot_expt_750_p_scaffold_304_curated_9
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9538..10155)
DNA (618bp) protein (206aa)
Protein tyrosine phosphatase n=2 Tax=Flavobacterium RepID=A5FFJ9_FLAJ1
Protein tyrosine phosphatase {ECO:0000313|EMBL:EJG02239.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
protein tyrosine phosphatase
scnpilot_expt_750_p_scaffold_304_curated_10
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10171..10644)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 RepID=R9CGR5_ELIME
Uncharacterized protein {ECO:0000313|EMBL:EOR28507.1}; TaxID=1216967 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_304_curated_11
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10725..11054)
DNA (330bp) protein (110aa)
Transcriptional regulator, ArsR family n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RXT1_LEAB4
transcriptional regulator, arsr family
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ADQ18145.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
scnpilot_expt_750_p_scaffold_304_curated_12
unknown

Not on your lists

11105..11218
DNA (114bp) protein (38aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_304_curated_13
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11345..13672
DNA (2328bp) protein (776aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00036F9E63
Uncharacterized protein {ECO:0000313|EMBL:KGO94333.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_304_curated_14
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13819..15951
DNA (2133bp) protein (711aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GWZ6_9SPHI
PAS sensor protein
scnpilot_expt_750_p_scaffold_304_curated_15
Elizabethkingia sp. BM10, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16110..17117)
DNA (1008bp) protein (336aa)
hypothetical protein; K00091 dihydroflavonol-4-reductase [EC:1.1.1.219]
dihydrokaempferol 4-reductase n=1 Tax=Myroides injenensis RepID=UPI00028A214E
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase {ECO:0000313|EMBL:AJW65112.1}; TaxID=722877 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia sp. BM10.;"
scnpilot_expt_750_p_scaffold_304_curated_16
Elizabethkingia sp. BM10, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17181..17756)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MS87_9SPHI
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:AJW65113.1}; TaxID=722877 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia sp. BM10.;"
putative Crp/Fnr family transcriptional regulator
scnpilot_expt_750_p_scaffold_304_curated_17
unknown

Not on your lists

comp(17758..18063)
DNA (306bp) protein (102aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_304_curated_18
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18017..18664)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VT87_9SPHI
Transcriptional regulator {ECO:0000313|EMBL:CDT23302.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
scnpilot_expt_750_p_scaffold_304_curated_19
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19267..19713
DNA (447bp) protein (149aa)
Hsp20/alpha crystallin family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W7N5_9FLAO
Small heat shock protein C2 {ECO:0000313|EMBL:CDS92058.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
heat shock protein Hsp20; K13993 HSP20 family protein
scnpilot_expt_750_p_scaffold_304_curated_20
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19790..20080
DNA (291bp) protein (97aa)
Uncharacterized protein {ECO:0000313|EMBL:CDS92057.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
scnpilot_expt_750_p_scaffold_304_curated_21
unknown

Not on your lists

comp(20144..20239)
DNA (96bp) protein (32aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_304_curated_22
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20289..21143
DNA (855bp) protein (285aa)
Membrane protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y1T2_PEDHD
Membrane protein {ECO:0000313|EMBL:CDS92056.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
membrane protein
scnpilot_expt_750_p_scaffold_304_curated_23
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21168..22166
DNA (999bp) protein (333aa)
ABC transporter related n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIU9_CHIPD
ABC transporter related {ECO:0000313|EMBL:CDS92055.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
ABC transporter; K01990 ABC-2 type transport system ATP-binding protein
scnpilot_expt_750_p_scaffold_304_curated_24
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22129..23121
DNA (993bp) protein (331aa)
ABC transporter permease protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y1T0_PEDHD
ABC transporter permease protein {ECO:0000313|EMBL:CDS92054.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
ABC transporter permease; K01992 ABC-2 type transport system permease protein
scnpilot_expt_750_p_scaffold_304_curated_25
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23444..24862
DNA (1419bp) protein (473aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T189_PALPW
nad-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ADQ78470.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_expt_750_p_scaffold_304_curated_26
Vibrio sp. JCM 19231, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24880..25488
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKG1_NIAKG
hypothetical protein
Flavoprotein oxygenases {ECO:0000313|EMBL:GAM55283.1}; TaxID=1481914 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sp. JCM 19231.;"
scnpilot_expt_750_p_scaffold_304_curated_27
Chryseobacterium luteum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25621..26541)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003652AFD
AraC family transcriptional regulator {ECO:0000313|EMBL:KFF00014.1}; TaxID=421531 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium luteum.;"
transcriptional regulator, AraC family
scnpilot_expt_750_p_scaffold_304_curated_28
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26600..27376)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037E2D0C
Dehydrogenase {ECO:0000313|EMBL:KEO72705.1}; TaxID=1048983 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source="Anditalea andensis.;"
short-chain dehydrogenase/reductase SDR
scnpilot_expt_750_p_scaffold_304_curated_29
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27480..28712)
DNA (1233bp) protein (411aa)
Transporter, major facilitator family protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G4W4_9SPHI
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEI89715.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
Tetracycline efflux protein TetA; K08151 MFS transporter, DHA1 family, tetracycline resistance protein
scnpilot_expt_750_p_scaffold_304_curated_30
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28799..29692)
DNA (894bp) protein (298aa)
Transcriptional regulator, AraC family n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G4W3_9SPHI
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEI89714.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
transcriptional regulator
Displaying items 1-30 of 106 in total

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