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scnpilot_expt_750_p_scaffold_734_curated

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Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_734_curated_1
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(332..928)
DNA (597bp) protein (199aa)
Putative uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X2N9_FLAB3
Uncharacterized protein {ECO:0000313|EMBL:KGO11851.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
hypothetical protein
scnpilot_expt_750_p_scaffold_734_curated_2
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(915..1409)
DNA (495bp) protein (165aa)
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Flavobacterium enshiense DK69 RepID=V6S4U4_9FLAO
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_expt_750_p_scaffold_734_curated_3
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1414..1791)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SAH2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU20928.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
scnpilot_expt_750_p_scaffold_734_curated_4
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2293..3177)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FW15_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDT09677.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein; K08994 putative membrane protein
scnpilot_expt_750_p_scaffold_734_curated_5
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3245..4093
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MKU4_9SPHI
Glycoside hydrolase family protein {ECO:0000313|EMBL:CDT09661.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
glycoside hydrolase; K07273 lysozyme
scnpilot_expt_750_p_scaffold_734_curated_6
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4102..4833
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MNC4_9SPHI
Putative Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:CDT09650.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
Zn-dependent hydrolase
scnpilot_expt_750_p_scaffold_734_curated_7
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4833..5129
DNA (297bp) protein (99aa)
Uncharacterized protein (Fragment) n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MBD0_9SPHI
Thioredoxin {ECO:0000313|EMBL:AIM36263.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
thioredoxin; K03671 thioredoxin 1
scnpilot_expt_750_p_scaffold_734_curated_8
unknown

Not on your lists

comp(5218..5379)
DNA (162bp) protein (54aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_734_curated_9
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5533..6093)
DNA (561bp) protein (187aa)
Segregation and condensation protein B n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VSN9_9SPHI
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
chromosome segregation and condensation protein ScpB; K06024 segregation and condensation protein B
scnpilot_expt_750_p_scaffold_734_curated_10
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6103..7227)
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MVC5_9SPHI
Putative menaquinone biosynthesis protein, SCO4550 family {ECO:0000313|EMBL:EEI90573.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
FO synthase subunit 2
scnpilot_expt_750_p_scaffold_734_curated_11
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7660..10962
DNA (3303bp) protein (1101aa)
TonB-linked outer membrane protein, SusC/RagA family n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G303_9SPHI
Outer membrane protein {ECO:0000313|EMBL:CDT17716.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
TonB-dependent receptor plug
scnpilot_expt_750_p_scaffold_734_curated_12
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10995..12710
DNA (1716bp) protein (572aa)
SusD family protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VSV3_9SPHI
SusD family protein {ECO:0000313|EMBL:EFK56854.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
RagB/SusD domain-containing protein
scnpilot_expt_750_p_scaffold_734_curated_13
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12745..14154
DNA (1410bp) protein (470aa)
peptidase S13 D-Ala-D-Ala carboxypeptidase C; K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P262_9SPHI
Peptidase S13, D-Ala-D-Ala carboxypeptidase C {ECO:0000313|EMBL:CDS92768.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
scnpilot_expt_750_p_scaffold_734_curated_14
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14165..15463
DNA (1299bp) protein (433aa)
MFS transporter permease n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NWB5_9SPHI
Permease {ECO:0000313|EMBL:CDS92767.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
major facilitator superfamily protein; K06902 MFS transporter, UMF1 family
scnpilot_expt_750_p_scaffold_734_curated_15
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15484..16212
DNA (729bp) protein (243aa)
Cysteine-rich domain protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G2Z9_9SPHI
Lactate utilization protein A {ECO:0000313|EMBL:CDS92766.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_734_curated_16
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16235..17125
DNA (891bp) protein (297aa)
Tat pathway signal sequence domain protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G2Z8_9SPHI
AP endonuclease {ECO:0000313|EMBL:CDS92765.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
xylose isomerase
scnpilot_expt_750_p_scaffold_734_curated_17
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17402..18976
DNA (1575bp) protein (525aa)
Amino acid/peptide transporter n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G2Z5_9SPHI
POT family proton (H+)-dependent oligopeptide transporter {ECO:0000313|EMBL:CDS92763.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
amino acid/peptide transporter; K03305 proton-dependent oligopeptide transporter, POT family
scnpilot_expt_750_p_scaffold_734_curated_18
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19060..20649
DNA (1590bp) protein (530aa)
Peptide transporter n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P273_9SPHI
POT family proton (H+)-dependent oligopeptide transporter {ECO:0000313|EMBL:CDS92761.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
amino acid/peptide transporter; K03305 proton-dependent oligopeptide transporter, POT family
scnpilot_expt_750_p_scaffold_734_curated_19
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20726..22018)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VGI5_9SPHI
Hemin transporter {ECO:0000313|EMBL:AIM36264.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
hypothetical protein; K03699 putative hemolysin
scnpilot_expt_750_p_scaffold_734_curated_20
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22164..23510)
DNA (1347bp) protein (449aa)
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEI90585.1}; EC=3.2.1.49 {ECO:0000313|EMBL:EEI90585.1};; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
Tat pathway signal sequence domain protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G2U5_9SPHI
alpha-N-acetylgalactosaminidase
scnpilot_expt_750_p_scaffold_734_curated_21
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23741..24847
DNA (1107bp) protein (369aa)
Mucin-desulfating sulfatase {ECO:0000313|EMBL:CDT09584.1}; EC=3.1.6.- {ECO:0000313|EMBL:CDT09584.1};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NW97_9SPHI
aminoglycoside phosphotransferase
scnpilot_expt_750_p_scaffold_734_curated_22
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24926..25570
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MG66_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDT09473.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_734_curated_23
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25595..25933)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J627_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ58088.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_734_curated_24
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


26159..26407
DNA (249bp) protein (83aa)
50S ribosomal protein L31 type B n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MR45_9SPHI
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
scnpilot_expt_750_p_scaffold_734_curated_25
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26486..27652
DNA (1167bp) protein (389aa)
Putative Glucose-1-phosphate thymidylyltransferase {ECO:0000313|EMBL:CDS92776.1}; EC=2.7.7.24 {ECO:0000313|EMBL:CDS92776.1};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P256_9SPHI
hypothetical protein
scnpilot_expt_750_p_scaffold_734_curated_26
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27664..28431
DNA (768bp) protein (256aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G2T9_9SPHI
scnpilot_expt_750_p_scaffold_734_curated_27
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28441..29280
DNA (840bp) protein (280aa)
Ribosomal protein L11 methyltransferase {ECO:0000313|EMBL:EEI90578.1}; EC=2.1.1.- {ECO:0000313|EMBL:EEI90578.1};; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
50S ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
Ribosomal protein L11 methyltransferase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G2T8_9SPHI
scnpilot_expt_750_p_scaffold_734_curated_28
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29288..30658
DNA (1371bp) protein (457aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (Murein peptide ligase) {ECO:0000313|EMBL:CDS92773.1}; EC=6.3.2.- {ECO:0000313|EMBL:CDS92773.1};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
UDP-N-acetylmuramate--L-alanine ligase; K02558 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-]
Mur ligase middle domain protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G2T7_9SPHI
scnpilot_expt_750_p_scaffold_734_curated_29
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30725..31054
DNA (330bp) protein (110aa)
DNA-binding protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P259_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDS92772.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
helix-turn-helix domain-containing protein
scnpilot_expt_750_p_scaffold_734_curated_30
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31192..32964
DNA (1773bp) protein (591aa)
Amino acid permease n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NWC6_9SPHI
Amino acid permease {ECO:0000313|EMBL:AIM36282.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
transporter yclF; K03305 proton-dependent oligopeptide transporter, POT family
Displaying items 1-30 of 46 in total

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