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scnpilot_expt_750_p_scaffold_25_curated

Search features with annotation key words

Displaying items 1-30 of 333 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_25_curated_1
Polaribacter sp. Hel1_85, Polaribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(156..530)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036858B8
Glycosyltransferase, GTnc family {ECO:0000313|EMBL:KGL61730.1}; TaxID=1250005 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Polaribacter.;" source="Polaribacter sp. Hel1_85.;"
scnpilot_expt_750_p_scaffold_25_curated_2
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(564..1313)
DNA (750bp) protein (250aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S4R3_PEDSD
LytTR family two component transcriptional regulator; K02477 two-component system, LytT family, response regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:ADY53081.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_expt_750_p_scaffold_25_curated_3
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1310..2917)
DNA (1608bp) protein (536aa)
Signal transduction histidine kinase LytS n=1 Tax=Pontibacter sp. BAB1700 RepID=J0LPQ3_9BACT
Signal transduction histidine kinase LytS {ECO:0000313|EMBL:EJF11503.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
signal transduction histidine kinase LytS
scnpilot_expt_750_p_scaffold_25_curated_4
unknown

Not on your lists

comp(3495..3935)
DNA (441bp) protein (147aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_25_curated_5
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4130..5680)
DNA (1551bp) protein (517aa)
Beta-lactamase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IEL3_FLUTR
Beta-lactamase {ECO:0000313|EMBL:CDS93329.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
beta-lactamase
scnpilot_expt_750_p_scaffold_25_curated_6
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5834..6493)
DNA (660bp) protein (220aa)
Putative membrane protein n=1 Tax=Flavobacterium sp. CF136 RepID=J3C8X2_9FLAO
Membrane protein {ECO:0000313|EMBL:KIA99909.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_25_curated_7
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6648..7688)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MWF8_9SPHI
Endonuclease {ECO:0000313|EMBL:AIM36085.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
putative endonuclease/exonuclease/phosphatase family protein
scnpilot_expt_750_p_scaffold_25_curated_8
Bacteroides sp. CAG:98, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7777..7905)
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:98 RepID=R7NVA8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDF16655.1}; TaxID=1262754 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:98.;"
scnpilot_expt_750_p_scaffold_25_curated_9
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8053..8979
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029A797C
Uncharacterized protein {ECO:0000313|EMBL:KIA92427.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_25_curated_10
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8983..9396
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029A284F
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ28182.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_25_curated_11
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9569..11110
DNA (1542bp) protein (514aa)
UPF0061 protein HMPREF0204_10441 n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VV93_9FLAO
UPF0061 protein CHSO_0368 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_25_curated_12
Chryseobacterium antarcticum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11155..11646)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI0003711D42
Uncharacterized protein {ECO:0000313|EMBL:KEY20178.1}; TaxID=266748 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium antarcticum.;"
scnpilot_expt_750_p_scaffold_25_curated_13
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11677..12045)
DNA (369bp) protein (123aa)
Transcriptional regulator, MerR family n=2 Tax=Myroides RepID=H1ZDG9_MYROD
Uncharacterized protein {ECO:0000313|EMBL:EKB04211.1}; TaxID=883155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides [odoratimimus] CIP 103059.;"
MerR family transcriptional regulator
scnpilot_expt_750_p_scaffold_25_curated_14
Myroides odoratus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12169..13056
DNA (888bp) protein (296aa)
alpha/beta hydrolase n=1 Tax=Pedobacter agri RepID=UPI00029A2887
Alpha/beta hydrolase fold containing protein {ECO:0000313|EMBL:EHQ43795.1}; TaxID=929704 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratus DSM 2801.;"
alpha/beta hydrolase
scnpilot_expt_750_p_scaffold_25_curated_15
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13162..15795)
DNA (2634bp) protein (878aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MFA0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDT32805.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_25_curated_16
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15833..16612)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NV44_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDT32796.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_25_curated_17
unknown

Not on your lists

comp(16679..16993)
DNA (315bp) protein (105aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_25_curated_18
unknown

Not on your lists

comp(16932..17072)
DNA (141bp) protein (47aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_25_curated_19
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17474..17986
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HQR4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ57827.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
ECF subfamily RNA polymerase sigma-24 subunit
scnpilot_expt_750_p_scaffold_25_curated_20
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18073..19254
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J581_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AIM36832.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
anti-FecI sigma factor FecR
scnpilot_expt_750_p_scaffold_25_curated_21
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19410..22694
DNA (3285bp) protein (1095aa)
TonB-linked outer membrane protein, SusC/RagA family n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G3D6_ECHVK
SusC/RagA family TonB-linked outer membrane protein
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:AGA79365.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
scnpilot_expt_750_p_scaffold_25_curated_22
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22705..24300
DNA (1596bp) protein (532aa)
RagB/SusD domain-containing protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J5D1_CYCMS
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AEL27567.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
scnpilot_expt_750_p_scaffold_25_curated_23
Chryseobacterium formosense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24347..25285)
DNA (939bp) protein (313aa)
Putative stomatin/prohibitin-family membrane protease subunit YbbK n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X4V6_FLAB3
Protease {ECO:0000313|EMBL:KFE98004.1}; TaxID=236814 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium formosense.;"
stomatin/prohibitin-family membrane protease subunit YbbK
scnpilot_expt_750_p_scaffold_25_curated_24
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25548..25823)
DNA (276bp) protein (92aa)
cation transporter n=1 Tax=Pedobacter agri RepID=UPI00029A1358
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EFK34912.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
cation diffusion facilitator family transporter
scnpilot_expt_750_p_scaffold_25_curated_25
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25838..26122)
DNA (285bp) protein (95aa)
Cation diffusion facilitator family transporter n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W3K1_9FLAO
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EFK34912.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
cation diffusion facilitator family transporter
scnpilot_expt_750_p_scaffold_25_curated_26
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26262..28124
DNA (1863bp) protein (621aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
PAS sensor protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XSK1_PEDHD
PAS sensor protein
scnpilot_expt_750_p_scaffold_25_curated_27
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28184..28984)
DNA (801bp) protein (267aa)
inorganic pyrophosphatase; K01507 inorganic pyrophosphatase [EC:3.6.1.1]
Inorganic pyrophosphatase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XV76_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:ETZ24184.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
scnpilot_expt_750_p_scaffold_25_curated_28
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29099..29554)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CBD5_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ81546.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_expt_750_p_scaffold_25_curated_29
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29824..30321
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NQW6_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ78020.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_expt_750_p_scaffold_25_curated_30
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30410..31006
DNA (597bp) protein (199aa)
Outer membrane protein-like protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CBR8_SPHS2
hypothetical protein; K08995 putative membrane protein
Outer membrane protein-like protein {ECO:0000313|EMBL:ADZ78660.1}; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
Displaying items 1-30 of 333 in total

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