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scnpilot_expt_750_p_scaffold_1048_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1048_curated_1
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(51..2876)
DNA (2826bp) protein (942aa)
Putative outer membrane protein, probably involved in nutrient binding n=1 Tax=Algoriphagus machipongonensis RepID=A3HZL8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KIA94939.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
TonB-dependent receptor
scnpilot_expt_750_p_scaffold_1048_curated_2
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3332..4363)
DNA (1032bp) protein (344aa)
TonB family domain protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FYW8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDS93150.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
outer membrane protein TonB
scnpilot_expt_750_p_scaffold_1048_curated_3
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4658..5668)
DNA (1011bp) protein (337aa)
Uncharacterized protein {ECO:0000313|EMBL:CDS93150.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
TonB family protein id=4401321 bin=GWA2_Flavobacterium_35_26 species=Flavobacterium frigoris genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
scnpilot_expt_750_p_scaffold_1048_curated_4
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5786..7246)
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FTB4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDS92178.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1048_curated_5
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7260..10490)
DNA (3231bp) protein (1077aa)
TonB-linked outer membrane protein, SusC/RagA family n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VL89_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDS92177.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
TonB-dependent receptor plug
scnpilot_expt_750_p_scaffold_1048_curated_6
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11138..12409)
DNA (1272bp) protein (424aa)
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Serine--tRNA ligase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FZ41_9SPHI
Seryl-tRNA synthetase {ECO:0000313|EMBL:AIM36082.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
scnpilot_expt_750_p_scaffold_1048_curated_7
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12722..13795)
DNA (1074bp) protein (358aa)
Deoxyribose-phosphate aldolase {ECO:0000313|EMBL:EEI90781.1}; EC=4.1.2.13 {ECO:0000313|EMBL:EEI90781.1};; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
fructose-bisphosphate aldolase; K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
Deoxyribose-phosphate aldolase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G291_9SPHI
scnpilot_expt_750_p_scaffold_1048_curated_8
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13907..14572
DNA (666bp) protein (222aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
ribosomal RNA small subunit methyltransferase I; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FZ40_9SPHI
scnpilot_expt_750_p_scaffold_1048_curated_9
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14609..15316
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VTT3_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK55712.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1048_curated_10
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15340..16965
DNA (1626bp) protein (542aa)
Apolipoprotein N-acyltransferase {ECO:0000313|EMBL:CDS92170.1}; EC=2.3.1.- {ECO:0000313|EMBL:CDS92170.1};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-]
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P175_9SPHI
scnpilot_expt_750_p_scaffold_1048_curated_11
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17174..18310
DNA (1137bp) protein (379aa)
Putative cysteine desulfurase IscS 1 {ECO:0000313|EMBL:CDS92169.1}; EC=2.8.1.7 {ECO:0000313|EMBL:CDS92169.1};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7]
Cysteine desulfurase n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MQC3_9SPHI
scnpilot_expt_750_p_scaffold_1048_curated_12
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18482..18901)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MSA7_9SPHI
Lipoprotein {ECO:0000313|EMBL:CDS92168.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
copper resistance lipoprotein NlpE
scnpilot_expt_750_p_scaffold_1048_curated_13
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18986..19318)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P3B3_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AIM36075.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1048_curated_14
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19721..20458
DNA (738bp) protein (246aa)
Electron transfer flavoprotein domain protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VTT9_9SPHI
Electron transfer flavoprotein domain protein {ECO:0000313|EMBL:EFK55718.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
electron transfer flavoprotein alpha/beta-subunit; K03521 electron transfer flavoprotein beta subunit
scnpilot_expt_750_p_scaffold_1048_curated_15
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20479..21453
DNA (975bp) protein (325aa)
Electron transfer flavoprotein subunit alpha n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MHI1_9SPHI
Electron transfer flavoprotein FAD-binding domain protein {ECO:0000313|EMBL:EEI91873.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
Electron transfer flavoprotein alpha/subunit beta; K03522 electron transfer flavoprotein alpha subunit
scnpilot_expt_750_p_scaffold_1048_curated_16
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21569..22195
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MWA8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDS92164.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein; K08999 hypothetical protein
scnpilot_expt_750_p_scaffold_1048_curated_17
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22241..23611
DNA (1371bp) protein (457aa)
Nucleoside transporter n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VTU2_9SPHI
Nucleoside permease {ECO:0000313|EMBL:AIM36071.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
nucleoside transporter
scnpilot_expt_750_p_scaffold_1048_curated_18
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23651..24976
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2H6T9_9SPHI
Mechanosensitive ion channel protein MscS {ECO:0000313|EMBL:AIM36070.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
mscs mechanosensitive ion channel; K16053 miniconductance mechanosensitive channel
scnpilot_expt_750_p_scaffold_1048_curated_19
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25396..26955)
DNA (1560bp) protein (520aa)
Ser/Thr phosphatase family protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VI34_9SPHI
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EFK59736.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
metallophosphoesterase
scnpilot_expt_750_p_scaffold_1048_curated_20
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27301..27804)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2H938_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDS92161.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1048_curated_21
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27896..28468)
DNA (573bp) protein (191aa)
NlpC/P60 family protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FZ27_9SPHI
Glycoside hydrolase {ECO:0000313|EMBL:AIM36067.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
NLP/P60 protein
scnpilot_expt_750_p_scaffold_1048_curated_22
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28644..29540
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MQF2_9SPHI
Multidrug transporter {ECO:0000313|EMBL:AIM36066.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
hypothetical protein
Displaying 22 items

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