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scnpilot_expt_750_p_scaffold_1608_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1608_curated_1
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..674
DNA (672bp) protein (224aa)
Transcriptional regulator, AraC family n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W364_9FLAO
Helix-turn-helix domain protein {ECO:0000313|EMBL:BAP31589.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
AraC family transcriptional regulator
scnpilot_expt_750_p_scaffold_1608_curated_2
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1131..1277
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J307_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ59349.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
scnpilot_expt_750_p_scaffold_1608_curated_3
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1600..2502
DNA (903bp) protein (301aa)
NADH(P)-binding n=1 Tax=uncultured organism RepID=T1W5J2_9ZZZZ
3-beta hydroxysteroid dehydrogenase {ECO:0000313|EMBL:KIA96169.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
NAD-dependent epimerase/dehydratase
scnpilot_expt_750_p_scaffold_1608_curated_4
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2549..3463
DNA (915bp) protein (305aa)
Helix-turn-helix domain n=1 Tax=uncultured organism RepID=T1W6H4_9ZZZZ
AraC family transcriptional regulator {ECO:0000313|EMBL:KFC18852.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
helix-turn-helix domain-containing protein
scnpilot_expt_750_p_scaffold_1608_curated_5
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3582..3926)
DNA (345bp) protein (115aa)
response regulator receiver protein n=1 Tax=Pedobacter agri RepID=UPI00029B08D3
Uncharacterized protein {ECO:0000313|EMBL:GAE63316.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
Response Regulator Receiver Signal transduction Histidine Kinase
scnpilot_expt_750_p_scaffold_1608_curated_6
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4103..5371)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0NEX2_ELIME
Uncharacterized protein {ECO:0000313|EMBL:KGO08576.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1608_curated_7
unknown

Not on your lists

comp(5982..6143)
DNA (162bp) protein (54aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1608_curated_8
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6209..8080)
DNA (1872bp) protein (624aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
PAS sensor protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XSK1_PEDHD
PAS sensor protein
scnpilot_expt_750_p_scaffold_1608_curated_9
unknown

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comp(8403..8657)
DNA (255bp) protein (85aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1608_curated_10
unknown

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8981..9583
DNA (603bp) protein (201aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1608_curated_11
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9772..10428
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NVE3_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AIM37114.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
response regulator receiver
scnpilot_expt_750_p_scaffold_1608_curated_12
unknown

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comp(10631..10972)
DNA (342bp) protein (114aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1608_curated_13
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11112..11423)
DNA (312bp) protein (104aa)
Metallo-beta-lactamase domain protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VV42_9FLAO
Putative quorum-quenching lactonase YtnP {ECO:0000313|EMBL:CEJ72048.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
scnpilot_expt_750_p_scaffold_1608_curated_14
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11438..12286)
DNA (849bp) protein (283aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W7M3_9FLAO
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:EFK33537.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1608_curated_15
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12326..12799)
DNA (474bp) protein (158aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SYP7_JANMA
Putative esterase {ECO:0000313|EMBL:CEJ72049.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1608_curated_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12857..13396)
DNA (540bp) protein (180aa)
DinB family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T984_NIAKG
DinB family protein
DinB family protein {ECO:0000313|EMBL:AEV98052.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_expt_750_p_scaffold_1608_curated_17
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13407..14051)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VZL4_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CEJ72050.1}; Flags: Precursor;; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1608_curated_18
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14063..14470)
DNA (408bp) protein (136aa)
type 12 methyltransferase n=1 Tax=Pedobacter arcticus RepID=UPI00030325D1
Ubiquinone biosynthesis O-methyltransferase {ECO:0000313|EMBL:CEJ72051.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
Methyltransferase type 11
scnpilot_expt_750_p_scaffold_1608_curated_19
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14481..14936)
DNA (456bp) protein (152aa)
Glyoxalase family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VWD6_9FLAO
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein {ECO:0000313|EMBL:CEJ72052.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
glyoxalase/bleomycin resistance protein/dioxygenase
scnpilot_expt_750_p_scaffold_1608_curated_20
Chryseobacterium sp. P1-3, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14991..15425)
DNA (435bp) protein (145aa)
acetyltransferase; K03827 putative acetyltransferase [EC:2.3.1.-]
Acetyltransferase, GNAT family n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VXI5_9FLAO
GCN5 family acetyltransferase {ECO:0000313|EMBL:KFF73349.1}; TaxID=1517683 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. P1-3.;"
scnpilot_expt_750_p_scaffold_1608_curated_21
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15512..16108)
DNA (597bp) protein (199aa)
TetR family transcriptional regulator n=1 Tax=Flavobacterium sp. F52 RepID=J0RTK8_9FLAO
HTH-type transcriptional repressor ComR {ECO:0000313|EMBL:CEJ72055.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
TetR family transcriptional regulator
scnpilot_expt_750_p_scaffold_1608_curated_22
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16221..16694)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MEY8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AIM37210.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
pyridoxamine 5'-phosphate oxidase-related fmN-binding protein
scnpilot_expt_750_p_scaffold_1608_curated_23
Chlorobaculum tepidum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

17127..17723
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MS53_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM72804.1}; TaxID=194439 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 /; TLS).;"
scnpilot_expt_750_p_scaffold_1608_curated_24
Myroides profundi, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17780..17914
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MNG0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AJH14487.1}; TaxID=480520 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides profundi.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1608_curated_25
unknown

Not on your lists

comp(18145..18225)
DNA (81bp) protein (27aa)

This feature has no annotations

Displaying 25 items

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