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scnpilot_expt_750_p_scaffold_916_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_916_curated_1
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

316..1230
DNA (915bp) protein (305aa)
Kinase, PfkB family {ECO:0000313|EMBL:EFK58869.1}; EC=2.7.1.20 {ECO:0000313|EMBL:EFK58869.1};; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
Kinase, PfkB family n=2 Tax=Sphingobacterium spiritivorum RepID=C2G5J6_9SPHI
PfkB domain-containing protein
scnpilot_expt_750_p_scaffold_916_curated_2
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1231..1476)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J9V4_9SPHI
Contig58, whole genome shotgun sequence {ECO:0000313|EMBL:KIO76634.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
putative heme/steroid binding protein
scnpilot_expt_750_p_scaffold_916_curated_3
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1508..2017)
DNA (510bp) protein (170aa)
RNA polymerase sigma factor n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NSP1_9SPHI
RNA polymerase sigma factor {ECO:0000313|EMBL:AIM36231.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_expt_750_p_scaffold_916_curated_4
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2279..3295)
DNA (1017bp) protein (339aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
UDP-N-acetylenolpyruvoylglucosamine reductase; K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158]
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HCH0_9SPHI
scnpilot_expt_750_p_scaffold_916_curated_5
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3400..4017
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NYK8_9SPHI
Transcriptional regulator {ECO:0000313|EMBL:CDT05228.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
TetR family transcriptional regulator
scnpilot_expt_750_p_scaffold_916_curated_6
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4010..4990)
DNA (981bp) protein (327aa)
Bacillithiol system thiol disulfide oxidoreductase, YpdA family {ECO:0000313|EMBL:EEI89557.1}; EC=1.8.-.- {ECO:0000313|EMBL:EEI89557.1};; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Bacillithiol system thiol disulfide oxidoreductase, YpdA family n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G5J1_9SPHI
scnpilot_expt_750_p_scaffold_916_curated_7
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5022..7214)
DNA (2193bp) protein (731aa)
Putative TIGR01666 family membrane protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G5J0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDT05205.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_916_curated_8
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7576..10176
DNA (2601bp) protein (867aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|SAAS:SAAS00018769}; EC=4.1.1.31 {ECO:0000256|SAAS:SAAS00018769};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
phosphoenolpyruvate carboxylase; K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
Phosphoenolpyruvate carboxylase n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MRC5_9SPHI
scnpilot_expt_750_p_scaffold_916_curated_9
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10252..10794
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MDG4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AIM36238.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
scnpilot_expt_750_p_scaffold_916_curated_10
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11159..12037
DNA (879bp) protein (293aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Ppx/GppA phosphatase family protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VKQ5_9SPHI
Exopolyphosphatase {ECO:0000313|EMBL:AIM36240.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
scnpilot_expt_750_p_scaffold_916_curated_11
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12026..13711)
DNA (1686bp) protein (562aa)
Site-specific recombinase, DNA invertase Pin n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G1E8_ECHVK
site-specific recombinase, DNA invertase Pin
Site-specific recombinase, DNA invertase Pin {ECO:0000313|EMBL:AGA79372.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
scnpilot_expt_750_p_scaffold_916_curated_12
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13813..15555
DNA (1743bp) protein (581aa)
hypothetical protein n=1 Tax=Anaerophaga thermohalophila RepID=UPI0002FF96A0
Uncharacterized protein {ECO:0000313|EMBL:KJS05467.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
scnpilot_expt_750_p_scaffold_916_curated_13
unknown

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comp(15644..15811)
DNA (168bp) protein (56aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_916_curated_14
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15951..16211
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W0X0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EFK36146.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_916_curated_15
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16394..16819)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y3U8_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ30893.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
scnpilot_expt_750_p_scaffold_916_curated_16
unknown

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16906..17136
DNA (231bp) protein (77aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_916_curated_17
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists

comp(17210..17851)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y2X3_9SPHN
hypothetical protein
Tax=CG_Pacearch_04
scnpilot_expt_750_p_scaffold_916_curated_18
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17884..18405)
DNA (522bp) protein (174aa)
Uncharacterized protein {ECO:0000313|EMBL:KEQ29591.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
scnpilot_expt_750_p_scaffold_916_curated_19
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18483..19700)
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FTS5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDT00965.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_916_curated_20
unknown

Not on your lists

comp(19687..19863)
DNA (177bp) protein (59aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_916_curated_21
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19872..20723)
DNA (852bp) protein (284aa)
D12 class N6 adenine-specific DNA methyltransferase; K06223 DNA adenine methylase [EC:2.1.1.72]
methyltransferase n=1 Tax=Marinilabilia salmonicolor RepID=UPI00029B33CA
Methyltransferase {ECO:0000313|EMBL:KEQ31220.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
scnpilot_expt_750_p_scaffold_916_curated_22
unknown

Not on your lists

20957..21277
DNA (321bp) protein (107aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_916_curated_23
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21247..22104)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029AE13C
Uncharacterized protein {ECO:0000313|EMBL:KGE12627.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_916_curated_24
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22141..22695)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FTS3_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI93553.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
scnpilot_expt_750_p_scaffold_916_curated_25
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22702..23487)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FTS4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KGE12631.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_916_curated_26
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23494..24126)
DNA (633bp) protein (211aa)
Peptidase, M23 family n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FTS7_9SPHI
Peptidase, M23 family {ECO:0000313|EMBL:EEI93557.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
putative cell wall endopeptidase family protein
scnpilot_expt_750_p_scaffold_916_curated_27
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24123..26162)
DNA (2040bp) protein (680aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FTS8_9SPHI
Putative mobilization protein {ECO:0000313|EMBL:KGE12632.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
plasmid transfer protein
scnpilot_expt_750_p_scaffold_916_curated_28
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26264..26695)
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YI45_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ26480.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
scnpilot_expt_750_p_scaffold_916_curated_29
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26753..27592)
DNA (840bp) protein (280aa)
conjugative transposon TraN protein n=1 Tax=Pedobacter agri RepID=UPI000299F71B
Uncharacterized protein {ECO:0000313|EMBL:KGE12633.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
conjugative transposon TraN protein
scnpilot_expt_750_p_scaffold_916_curated_30
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27604..28800)
DNA (1197bp) protein (399aa)
conjugative transposon TraM protein n=1 Tax=Pedobacter agri RepID=UPI00029A4ED6
Uncharacterized protein {ECO:0000313|EMBL:KGE12634.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
conjugative transposon TraM protein
Displaying items 1-30 of 37 in total

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